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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50149 (77 seq.)
>W1711309934
MARF01000079
Bacillota
Clostridium perfringens [MARF]
104291
104379
+
Leu
TAA
[ENA]
¡û
>W1711310213
MARJ01000072
Bacillota
Clostridium perfringens [MARJ]
27786
27698
-
Leu
TAA
[ENA]
¡û
>W1711310257
MARJ01000110
Bacillota
Clostridium perfringens [MARJ]
121935
122023
+
Leu
TAA
[ENA]
¡û
>W1711310476
MARM01000079
Bacillota
Clostridium perfringens [MARM]
531
443
-
Leu
TAA
[ENA]
¡û
>W1711310504
MARM01000093
Bacillota
Clostridium perfringens [MARM]
142170
142258
+
Leu
TAA
[ENA]
¡û
>W1711310582
MARN01000066
Bacillota
Clostridium perfringens [MARN]
169563
169651
+
Leu
TAA
[ENA]
¡û
>W1711310781
MARQ01000088
Bacillota
Clostridium perfringens [MARQ]
115940
115852
-
Leu
TAA
[ENA]
¡û
>W1711310782
MARQ01000093
Bacillota
Clostridium perfringens [MARQ]
147244
147332
+
Leu
TAA
[ENA]
¡û
>W1711310881
MARR01000116
Bacillota
Clostridium perfringens [MARR]
147508
147596
+
Leu
TAA
[ENA]
¡û
>W1711311007
MART01000052
Bacillota
Clostridium perfringens [MART]
54824
54912
+
Leu
TAA
[ENA]
¡û
>W1711311035
MART01000076
Bacillota
Clostridium perfringens [MART]
126161
126073
-
Leu
TAA
[ENA]
¡û
>W1711311078
MARU01000061
Bacillota
Clostridium perfringens [MARU]
24437
24349
-
Leu
TAA
[ENA]
¡û
>W1711311121
MARU01000067
Bacillota
Clostridium perfringens [MARU]
68826
68738
-
Leu
TAA
[ENA]
¡û
>W1711311214
MARW01000045
Bacillota
Clostridium perfringens [MARW]
16512
16424
-
Leu
TAA
[ENA]
¡û
>W1711311259
MARW01000067
Bacillota
Clostridium perfringens [MARW]
510
422
-
Leu
TAA
[ENA]
¡û
>W1711311264
MARW01000068
Bacillota
Clostridium perfringens [MARW]
120
32
-
Leu
TAA
[ENA]
¡û
>W1711311312
MARX01000038
Bacillota
Clostridium perfringens [MARX]
115473
115561
+
Leu
TAA
[ENA]
¡û
>W1711311335
MARX01000044
Bacillota
Clostridium perfringens [MARX]
68887
68799
-
Leu
TAA
[ENA]
¡û
>W1711311518
MASA01000037
Bacillota
Clostridium perfringens [MASA]
8916
9004
+
Leu
TAA
[ENA]
¡û
>W1711311575
MASA01000067
Bacillota
Clostridium perfringens [MASA]
419
331
-
Leu
TAA
[ENA]
¡û
>W1711311646
MASB01000060
Bacillota
Clostridium perfringens [MASB]
508
420
-
Leu
TAA
[ENA]
¡û
>W1711311652
MASB01000063
Bacillota
Clostridium perfringens [MASB]
138377
138465
+
Leu
TAA
[ENA]
¡û
>W1711311939
MASF01000047
Bacillota
Clostridium perfringens [MASF]
26622
26710
+
Leu
TAA
[ENA]
¡û
>W1712040339
NFKH01000007
Bacillota
Clostridium perfringens [NFKH]
202
114
-
Leu
TAA
[ENA]
¡û
>W1712040341
NFKH01000011
Bacillota
Clostridium perfringens [NFKH]
36598
36510
-
Leu
TAA
[ENA]
¡û
>C171020907
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
3144497
3144409
-
Leu
TAA
-
¡û
>C171020969
CP013101
Bacillota
Clostridium perfringens FORC_025 [CP013101]
832206
832118
-
Leu
TAA
-
¡û
>C006414
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
3057019
3056931
-
Leu
TAA
[Ensembl]
¡û
>C006477
CP000246
Bacillota
Clostridium perfringens ATCC 13124 [CP000246]
810957
810869
-
Leu
TAA
[Ensembl]
¡û
>WENV180168409
OAVR01000017
[OAVR] human gut metagenome; faeces
76862
76774
-
Leu
TAA
[ENA]
¢þ
>WENV180228031
OBBW01000015
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
91631
91543
-
Leu
TAA
[ENA]
¢þ
>WENV180228054
OBBW01000032
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
22748
22660
-
Leu
TAA
[ENA]
¢þ
>WENV180407692
OBUR01000145
[OBUR] human gut metagenome; faeces
30464
30552
+
Leu
TAA
[ENA]
¢þ
>WENV180556435
OCJS01000028
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
148
60
-
Leu
TAA
[ENA]
¢þ
>WENV180556473
OCJS01000085
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
1960
1872
-
Leu
TAA
[ENA]
¢þ
>WENV180556819
OCJT01001323
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
1272
1184
-
Leu
TAA
[ENA]
¢þ
>WENV180598742
OCPN01000061
[OCPN] human gut metagenome; faeces
22895
22983
+
Leu
TAA
[ENA]
¢þ
>WENV181328119
OFLS01000450
[OFLS] metagenome; faeces
6923
6835
-
Leu
TAA
[ENA]
¢þ
>WENV181329084
OFLW01000001
[OFLW] metagenome; faeces
28463
28375
-
Leu
TAA
[ENA]
¢þ
>WENV181329124
OFLW01000015
[OFLW] metagenome; faeces
23259
23171
-
Leu
TAA
[ENA]
¢þ
>WENV181329130
OFLW01000015
[OFLW] metagenome; faeces
22723
22635
-
Leu
TAA
[ENA]
¢þ
>W08001396
ABDU01000027
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
1648
1736
+
Leu
TAA
[ENA]
¡û
>W08001455
ABDU01000061
Bacillota
Clostridium perfringens C str. JGS1495 [ABDU]
124869
124957
+
Leu
TAA
[ENA]
¡û
>W08001483
ABDV01000008
Bacillota
Clostridium perfringens B str. ATCC 3626 [ABDV]
85840
85928
+
Leu
TAA
[ENA]
¡û
>W08001518
ABDV01000025
Bacillota
Clostridium perfringens B str. ATCC 3626 [ABDV]
715
803
+
Leu
TAA
[ENA]
¡û
>W08001670
ABDX01000011
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
56720
56635
-
Leu
TAA
[ENA]
¡û
>W08001706
ABDX01000041
Bacillota
Clostridium perfringens CPE str. F4969 [ABDX]
676
764
+
Leu
TAA
[ENA]
¡û
>W08009044
ABOO01000002
Bacillota
Clostridium perfringens D str. JGS1721 [ABOO]
90693
90781
+
Leu
TAA
[ENA]
¡û
>WENV181471379
OGEW01002618
[OGEW] metagenome; Human gut stool
1697
1785
+
Leu
TAA
[ENA]
¢þ
>WENV181798440
OGRV01000268
[OGRV] human gut metagenome; fecal sample 3 from infant 4
126
214
+
Leu
TAA
[ENA]
¢þ
>WENV181814682
OGTH01000095
[OGTH] human gut metagenome; fecal sample 4 from infant 6
27003
26915
-
Leu
TAA
[ENA]
¢þ
>WENV182846787
OKJR01002759
[OKJR] human gut metagenome; human gut
392
304
-
Leu
TAA
[ENA]
¢þ
>WENV182888264
OKSE01000100
[OKSE] human gut metagenome; faeces
35120
35208
+
Leu
TAA
[ENA]
¢þ
>C181162253
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
3109206
3109118
-
Leu
TAA
-
¡û
>C181162315
CP028149
Bacillota
Clostridium perfringens JXJA17 [CP028149]
859424
859336
-
Leu
TAA
-
¡û
>C181210590
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
3091437
3091349
-
Leu
TAA
-
¡û
>C181210652
LS483393
Bacillota
Clostridium perfringens NCTC13170 [LS483393]
853119
853031
-
Leu
TAA
-
¡û
>W1911723309
QRFR01000004
Bacillota
Clostridium perfringens 79385-3 [QRFR]
21402
21314
-
Leu
TAA
[ENA]
¡û
>W1911723350
QRFR01000042
Bacillota
Clostridium perfringens 79385-3 [QRFR]
224
312
+
Leu
TAA
[ENA]
¡û
>W1810178795
PJSI01000004
Bacillota
Clostridium perfringens TAM-NE46 [PJSI]
93261
93173
-
Leu
TAA
[ENA]
¡û
>W1810178800
PJSI01000005
Bacillota
Clostridium perfringens TAM-NE46 [PJSI]
205473
205561
+
Leu
TAA
[ENA]
¡û
>W1810178981
PJSK01000018
Bacillota
Clostridium perfringens TAM-NE40 [PJSK]
22646
22558
-
Leu
TAA
[ENA]
¡û
>W1810179797
PJSV01000002
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
168046
167958
-
Leu
TAA
[ENA]
¡û
>W1810179808
PJSV01000004
Bacillota
Clostridium perfringens NAG-NE31 [PJSV]
205984
206072
+
Leu
TAA
[ENA]
¡û
>W1810180127
PJSZ01000004
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
159919
160007
+
Leu
TAA
[ENA]
¡û
>W1810180606
PJTF01000009
Bacillota
Clostridium perfringens 96-7415 [PJTF]
70728
70640
-
Leu
TAA
[ENA]
¡û
>W1810180638
PJTF01000014
Bacillota
Clostridium perfringens 96-7415 [PJTF]
215
127
-
Leu
TAA
[ENA]
¡û
>W1810180867
PJTI01000005
Bacillota
Clostridium perfringens UDE 95-1372 [PJTI]
159879
159967
+
Leu
TAA
[ENA]
¡û
>W1810180934
PJTJ01000004
Bacillota
Clostridium perfringens T3381 [PJTJ]
165351
165439
+
Leu
TAA
[ENA]
¡û
>W1810180939
PJTJ01000008
Bacillota
Clostridium perfringens T3381 [PJTJ]
81541
81629
+
Leu
TAA
[ENA]
¡û
>W1810180981
PJTK01000001
Bacillota
Clostridium perfringens TAM-NE43 [PJTK]
2006145
2006233
+
Leu
TAA
[ENA]
¡û
>W1810180986
PJTK01000003
Bacillota
Clostridium perfringens TAM-NE43 [PJTK]
142399
142487
+
Leu
TAA
[ENA]
¡û
>W1810803469
QRQT01000004
Bacillota
Clostridium perfringens AF30-3 [QRQT]
158681
158769
+
Leu
TAA
[ENA]
¡û
>W121003568
AFES01000014
Bacillota
Clostridium perfringens F262 [AFES]
128119
128031
-
Leu
TAA
[ENA]
¡û
>W121003616
AFES01000037
Bacillota
Clostridium perfringens F262 [AFES]
22362
22274
-
Leu
TAA
[ENA]
¡û
>W1710586812
FQXM01000008
Bacillota
Clostridium grantii DSM 8605 [FQXM]
130154
130242
+
Leu
TAA
[ENA]
¡û
>W1710586828
FQXM01000025
Bacillota
Clostridium grantii DSM 8605 [FQXM]
53802
53890
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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