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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.501913 (85 seq.)
>W1710874870
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123405
123476
+
Cys
GCA
[ENA]
¡û
>W1711109134
LTUJ01000010
Actinomycetota
Propionibacterium sp. HMSC067A01 [LTUJ]
268331
268260
-
Cys
GCA
[ENA]
¡û
>W131206194
ATFM01000005
Actinomycetota
Propionibacterium sp. HGH0353 [ATFM]
1501181
1501110
-
Cys
GCA
[ENA]
¡û
>W131224910
AUDD01000008
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
96549
96478
-
Cys
GCA
[ENA]
¡û
>W1711334199
MBQD01000020
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
361847
361776
-
Cys
GCA
[ENA]
¡û
>C171044675
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
930920
930991
+
Cys
GCA
-
¡û
>C171096196
CP019605
Actinomycetota
Tessaracoccus flavus RP1 [CP019605]
1240594
1240665
+
Cys
GCA
-
¡û
>WENV180000048
CZKA01000074
[CZKA] metagenome; liquid mineral medium
2059
2130
+
Cys
GCA
[ENA]
¢þ
>WENV180030861
FTJN01213556
[FTJN] metagenome; soil
130
59
-
Cys
GCA
[ENA]
¢þ
>WENV180230027
OBCK01000684
[OBCK] human gut metagenome; human gut
716
645
-
Cys
GCA
[ENA]
¢þ
>WENV180241362
OBDG01000084
[OBDG] human gut metagenome; human gut
14362
14291
-
Cys
GCA
[ENA]
¢þ
>WENV180357176
OBNM01044841
[OBNM] marine metagenome; none
309
238
-
Cys
GCA
[ENA]
¢þ
>WENV180700499
ODDS01001346
[ODDS] human metagenome; G_DNA_Posterior fornix
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180706764
ODEU01001346
[ODEU] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180706950
ODEX01001346
[ODEX] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180707074
ODEZ01001346
[ODEZ] human metagenome; G_DNA_Posterior fornix
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180707198
ODFB01001346
[ODFB] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180707384
ODFE01001346
[ODFE] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180707446
ODFF01001346
[ODFF] human metagenome; G_DNA_Buccal mucosa
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180895151
ODMV01001346
[ODMV] human metagenome; G_DNA_Anterior nares
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180895771
ODNF01001346
[ODNF] human metagenome; G_DNA_Buccal mucosa
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180898469
ODNQ01001346
[ODNQ] human metagenome; G_DNA_Palatine Tonsils
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180903214
ODOS01001346
[ODOS] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180909671
ODQO01001346
[ODQO] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180909795
ODQQ01001346
[ODQQ] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911345
ODRP01001346
[ODRP] human metagenome; G_DNA_Posterior fornix
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911655
ODRU01001346
[ODRU] human metagenome; G_DNA_Anterior nares
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911965
ODRZ01001346
[ODRZ] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180912337
ODSF01001346
[ODSF] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180940222
ODTY01000691
[ODTY] human metagenome; G_DNA_Anterior nares
1182
1111
-
Cys
GCA
[ENA]
¢þ
>WENV181042203
ODXT01000001
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
369148
369077
-
Cys
GCA
[ENA]
¢þ
>WENV181116657
OEFE01001346
[OEFE] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV181311802
OFJB01013284
[OFJB] sludge metagenome; sludge
2096
2023
-
Cys
GCA
[ENA]
¢þ
>WENV182641446
OJLH01000003
[OJLH] metagenome; surface
118915
118986
+
Cys
GCA
[ENA]
¢þ
>WENV182646129
OJMA01000019
[OJMA] metagenome; surface
126649
126578
-
Cys
GCA
[ENA]
¢þ
>WENV182797292
OJSX01000001
[OJSX] human gut metagenome; human gut
543696
543625
-
Cys
GCA
[ENA]
¢þ
>WENV182808916
OJWK01002337
[OJWK] human gut metagenome; human gut
256
185
-
Cys
GCA
[ENA]
¢þ
>WENV182815490
OJYR01000150
[OJYR] human gut metagenome; human gut
15684
15613
-
Cys
GCA
[ENA]
¢þ
>WENV182815892
OJYV01000018
[OJYV] human gut metagenome; human gut
5888
5817
-
Cys
GCA
[ENA]
¢þ
>WENV182818543
OJZW01000001
[OJZW] human gut metagenome; human gut
104311
104382
+
Cys
GCA
[ENA]
¢þ
>WENV182828729
OKDJ01000103
[OKDJ] human gut metagenome; human gut
2920
2849
-
Cys
GCA
[ENA]
¢þ
>WENV182848055
OKKE01008214
[OKKE] human gut metagenome; human gut
638
709
+
Cys
GCA
[ENA]
¢þ
>WENV182853362
OKMK01000217
[OKMK] human gut metagenome; human gut
5501
5572
+
Cys
GCA
[ENA]
¢þ
>WENV182857345
OKNX01000020
[OKNX] human gut metagenome; human gut
31038
31109
+
Cys
GCA
[ENA]
¢þ
>WENV182858054
OKOC01000004
[OKOC] human gut metagenome; human gut
115482
115553
+
Cys
GCA
[ENA]
¢þ
>WENV182860482
OKOW01000877
[OKOW] human gut metagenome; human gut
318
389
+
Cys
GCA
[ENA]
¢þ
>WENV183636791
OONO01052067
[OONO] human gut metagenome; mucous membran biopsy from the gut
619
548
-
Cys
GCA
[ENA]
¢þ
>C181229781
LT985188
Actinomycetota
Micropruina glycogenica [LT985188]
1507114
1507043
-
Cys
GCA
-
¡û
>C191030079
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
1922250
1922321
+
Cys
GCA
-
¡û
>C191036612
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
1579858
1579787
-
Cys
GCA
-
¡û
>C191180516
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
2681762
2681833
+
Cys
GCA
-
¡û
>C191211306
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
409639
409710
+
Cys
GCA
-
¡û
>W09114711
ABZW01000001
Actinomycetota
Cutibacterium acnes SK137 [ABZW]
328164
328235
+
Cys
GCA
[ENA]
¡û
>W1910141221
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
823229
823158
-
Cys
GCA
[ENA]
¡û
>W1910627395
LKVD01000003
Actinomycetota
Cutibacterium acnes 9·î29Æü [LKVD]
363022
362951
-
Cys
GCA
[ENA]
¡û
>W1910811965
MVCG01000002
Actinomycetota
Cutibacterium acnes subsp. acnes 11-90 [MVCG]
238444
238515
+
Cys
GCA
[ENA]
¡û
>W1911419659
NXAU01000002
Actinomycetota
Cutibacterium acnes P15-186 [NXAU]
353066
353137
+
Cys
GCA
[ENA]
¡û
>W1911564867
PCNO01000002
Actinomycetota
Cutibacterium acnes T20816 [PCNO]
357442
357513
+
Cys
GCA
[ENA]
¡û
>W1810089825
PGEZ01000001
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
94918
94989
+
Cys
GCA
[ENA]
¡û
>C151096760
CP012647
Actinomycetota
Cutibacterium acnes [CP012647]
1241120
1241049
-
Cys
GCA
-
¡û
>ENV09003586
ADGO01095698
Compost metagenome contig00001
250
321
+
Cys
GCA
[ENA]
¡û
>W10122687
ADZG01000053
Actinomycetota
Cutibacterium acnes HL078PA1 [ADZG]
221749
221820
+
Cys
GCA
[ENA]
¡û
>W1511398113
JTDJ01000112
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
29507
29580
+
Cys
GCA
[ENA]
¡û
>W11129431
ADZG01000053
Actinomycetota
Cutibacterium acnes HL078PA1 [ADZG]
221749
221820
+
Cys
GCA
[ENA]
¡û
>W1511472681
JVZP01000130
Actinomycetota
Cutibacterium acnes 119_PAVI [JVZP]
299395
299466
+
Cys
GCA
[ENA]
¡û
>W11174221
AFUM01000003
Actinomycetota
Cutibacterium acnes SK182 [AFUM]
540169
540098
-
Cys
GCA
[ENA]
¡û
>C161051576
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
2964952
2965023
+
Cys
GCA
-
¡û
>C161071850
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
632279
632350
+
Cys
GCA
[Ensembl]
¡û
>W1610048765
BBEJ01001111
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
331
258
-
Cys
GCA
[ENA]
¡û
>W1610052747
BBIE01000234
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
382
309
-
Cys
GCA
[ENA]
¡û
>W1610052762
BBIE01000820
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
411
338
-
Cys
GCA
[ENA]
¡û
>W1610052804
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2145
2218
+
Cys
GCA
[ENA]
¡û
>W1610052807
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2980
3053
+
Cys
GCA
[ENA]
¡û
>W1610068474
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10967
11040
+
Cys
GCA
[ENA]
¡û
>C131003883
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
1744432
1744361
-
Cys
GCA
[Ensembl]
¡û
>W1610737216
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123405
123476
+
Cys
GCA
[ENA]
¡û
>W1611066166
MBQD01000020
Actinomycetota
Tessaracoccus lapidicaptus [MBQD]
361847
361776
-
Cys
GCA
[ENA]
¡û
>W1710045237
BBEJ01001111
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
331
258
-
Cys
GCA
[ENA]
¡û
>W1710049125
BBIE01000234
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
382
309
-
Cys
GCA
[ENA]
¡û
>W1710049140
BBIE01000820
Actinomycetota
Kineosporia succinea JCM 9957 [BBIE]
411
338
-
Cys
GCA
[ENA]
¡û
>W1710049182
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2145
2218
+
Cys
GCA
[ENA]
¡û
>W1710049185
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2980
3053
+
Cys
GCA
[ENA]
¡û
>W1710065847
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10967
11040
+
Cys
GCA
[ENA]
¡û
>W1710083197
BDJE01000017
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
104658
104585
-
Cys
GCA
[ENA]
¡û
>W1710512555
FMZM01000012
Actinomycetota
Nocardioides lianchengensis [FMZM]
60819
60890
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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