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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50235 (24 seq.)
>W131179524
ARML01000106
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
126268
126181
-
Ser
GGA
[ENA]
¡û
>W131241494
BARX01000013
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
45987
45900
-
Ser
GGA
[ENA]
¡û
>WENV170024013
BCQL01015510
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1576
1663
+
Ser
GGA
[ENA]
¡û
>WENV170024366
BCQL01048247
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
377
464
+
Ser
GGA
[ENA]
¡û
>W1910007306
BCUR01000004
Gammaproteobacteria
Vibrio superstes G3-29 [BCUR]
1908769
1908682
-
Ser
GGA
[ENA]
¡û
>W1910178268
BJEQ01000005
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
27520
27433
-
Ser
GGA
[ENA]
¡û
>W1910180668
BJLH01000014
Gammaproteobacteria
Vibrio comitans NBRC 102076 [BJLH]
125484
125571
+
Ser
GGA
[ENA]
¡û
>W1910677468
MCUF01000027
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
21224
21137
-
Ser
GGA
[ENA]
¡û
>W2010076544
BCUR01000004
Gammaproteobacteria
Vibrio superstes G3-29 [BCUR]
1908769
1908682
-
Ser
GGA
[ENA]
¡û
>W2010091607
BJEQ01000005
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
27520
27433
-
Ser
GGA
[ENA]
¡û
>W2010094354
BJLH01000014
Gammaproteobacteria
Vibrio comitans NBRC 102076 [BJLH]
125484
125571
+
Ser
GGA
[ENA]
¡û
>W2010103027
BJXK01000006
Gammaproteobacteria
Vibrio superstes NBRC 103154 [BJXK]
300048
299961
-
Ser
GGA
[ENA]
¡û
>W2010811201
MCUF01000027
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
21224
21137
-
Ser
GGA
[ENA]
¡û
>W2011858160
UNRE01000005
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
423166
423253
+
Ser
GGA
[ENA]
¡û
>W2012070529
VKHR01000039
Gammaproteobacteria
Shewanella sp. TC10 [VKHR]
3014
2927
-
Ser
GGA
[ENA]
¡û
>W2012330179
WHRY01000002
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
2724
2637
-
Ser
GGA
[ENA]
¡û
>W2110016242
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
4140243
4140330
+
Ser
GGA
[ENA]
¡û
>W2110069186
BPEV01000028
Gammaproteobacteria
Shewanella sp. KT0246 [BPEV]
41034
40947
-
Ser
GGA
[ENA]
¡û
>C211007649
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
2545640
2545553
-
Ser
GGA
-
¡û
>C211007742
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
2498923
2498836
-
Ser
GGA
-
¡û
>C211104281
CP056123
Gammaproteobacteria
Moritella sp. 24 [CP056123]
1099098
1099011
-
Ser
GGA
-
¡û
>C231006827
AP024866
Gammaproteobacteria
Vibrio comitans LMG 23416 [AP024866, AP024867]
1152282
1152369
+
Ser
GGA
-
¡û
>C231249206
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
3173994
3173907
-
Ser
GGA
-
¡û
>C241274160
CP126972
Gammaproteobacteria
Shewanella goraebulensis DAU312 [CP126972]
2586612
2586525
-
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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