This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50263 (34 seq.)
>WENV180097513
MTBK01193265
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
358
274
-
Leu
GAG
[ENA]
¡û
>WENV181230108
OFEK01000294
[OFEK] activated sludge metagenome; Anaerobic digester
27246
27330
+
Leu
GAG
[ENA]
¡û
>WENV181230216
OFEK01000427
[OFEK] activated sludge metagenome; Anaerobic digester
12754
12670
-
Leu
GAG
[ENA]
¡û
>WENV181230883
OFEK01004736
[OFEK] activated sludge metagenome; Anaerobic digester
3713
3628
-
Leu
GAG
[ENA]
¡û
>WENV181231077
OFEK01009254
[OFEK] activated sludge metagenome; Anaerobic digester
127
211
+
Leu
GAG
[ENA]
¡û
>WENV181231258
OFEK01016071
[OFEK] activated sludge metagenome; Anaerobic digester
1893
1807
-
Leu
GAG
[ENA]
¡û
>WENV181231917
OFEK01088476
[OFEK] activated sludge metagenome; Anaerobic digester
5
89
+
Leu
GAG
[ENA]
¡û
>At1258
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
1528671
1528755
+
Leu
GAG
[Ensembl]
¡û
>At1284
CP000562
Euryarchaeota
Methanoculleus marisnigri JR1 [CP000562]
1647663
1647579
-
Leu
GAG
[Ensembl]
¡û
>WENV170668760
LAHQ01029753
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
103
19
-
Leu
GAG
[ENA]
¡û
>WENV170677294
LDZT01004757
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2142
2227
+
Leu
GAG
[ENA]
¡û
>WENV170677655
LDZT01007766
[LDZT] terrestrial metagenome; oil reservoir sample SB1
475
391
-
Leu
GAG
[ENA]
¡û
>WENV170678496
LDZU01001018
[LDZU] terrestrial metagenome; oil reservoir sample SB2
13
97
+
Leu
GAG
[ENA]
¡û
>WENV170678717
LDZU01004031
[LDZU] terrestrial metagenome; oil reservoir sample SB2
3355
3440
+
Leu
GAG
[ENA]
¡û
>WENV170716480
LSQX01000840
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
96
12
-
Leu
GAG
[ENA]
¡û
>WENV170724845
LSQX01320868
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2030
2114
+
Leu
GAG
[ENA]
¡û
>WENV170726696
LSQX01390570
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
102
186
+
Leu
GAG
[ENA]
¡û
>W1910211683
FMID01000038
Euryarchaeota
Methanoculleus chikugoensis [FMID]
67056
67140
+
Leu
GAG
[ENA]
¡û
>W1910211685
FMID01000041
Euryarchaeota
Methanoculleus chikugoensis [FMID]
20698
20784
+
Leu
GAG
[ENA]
¡û
>W1910572518
JMIO01000033
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
30657
30573
-
Leu
GAG
[ENA]
¡û
>W1910572530
JMIO01000064
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
6000
5916
-
Leu
GAG
[ENA]
¡û
>W1910583828
JXOJ01000004
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
165675
165591
-
Leu
GAG
[ENA]
¡û
>W1910783526
MPOY01000192
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
6265
6181
-
Leu
GAG
[ENA]
¡û
>A211000104
AP019781
Methanobacteriota
Methanoculleus chikugoensis MG62 [AP019781]
1711989
1712073
+
Leu
GAG
-
¡û
>A211000105
AP019781
Methanobacteriota
Methanoculleus chikugoensis MG62 [AP019781]
1797586
1797672
+
Leu
GAG
-
¡û
>W2010378137
FMID01000038
Euryarchaeota
Methanoculleus chikugoensis [FMID]
67056
67140
+
Leu
GAG
[ENA]
¡û
>W2010758251
JMIO01000033
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
30657
30573
-
Leu
GAG
[ENA]
¡û
>W2010758263
JMIO01000064
Euryarchaeota
Methanoculleus sp. MH98A [JMIO]
6000
5916
-
Leu
GAG
[ENA]
¡û
>W2010763546
JXOJ01000004
Euryarchaeota
Methanoculleus sediminis S3Fa [JXOJ]
165675
165591
-
Leu
GAG
[ENA]
¡û
>W2010892312
MPOY01000192
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
6265
6181
-
Leu
GAG
[ENA]
¡û
>W1610000251
AASI01000001
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
28089
28005
-
Leu
GAG
[ENA]
¡û
>W1610000274
AASI01000010
Euryarchaeota
Methanoculleus marisnigri JR1 [AASI]
37041
37125
+
Leu
GAG
[ENA]
¡û
>W1610063066
BCNY01000013
Euryarchaeota
Methanoculleus horonobensis T10 [BCNY]
376040
376124
+
Leu
GAG
[ENA]
¡û
>W1610946085
LUYK01000228
Euryarchaeota
Methanomicrobiales archaeon Methan_07 [LUYK]
1809
1893
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK