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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.503192 (82 seq.)
>W1710877111
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
77099
77169
+
Gly
TCC
[ENA]
¡û
>W1710877112
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
77208
77278
+
Gly
TCC
[ENA]
¡û
>W1710909387
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1716
1786
+
Gly
TCC
[ENA]
¡û
>W1710909388
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1825
1895
+
Gly
TCC
[ENA]
¡û
>W131087703
AOCX01000007
Bacillota
Oceanobacillus kimchii X50 [AOCX]
427148
427221
+
Gly
TCC
[ENA]
¡û
>W131087722
AOCX01000014
Bacillota
Oceanobacillus kimchii X50 [AOCX]
165655
165728
+
Gly
TCC
[ENA]
¡û
>W131087724
AOCX01000015
Bacillota
Oceanobacillus kimchii X50 [AOCX]
987875
987802
-
Gly
TCC
[ENA]
¡û
>W1711589655
MOEL01000007
Bacillota
Exiguobacterium sp. AT1b [MOEL]
98584
98511
-
Gly
TCC
[ENA]
¡û
>W1711676358
MRSV01000001
Bacillota
Exiguobacterium profundum [MRSV]
2729557
2729630
+
Gly
TCC
[ENA]
¡û
>W1711713096
MTCT01000006
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
208780
208707
-
Gly
TCC
[ENA]
¡û
>W1712017233
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
1206
1276
+
Gly
TCC
[ENA]
¡û
>W1712017234
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
1315
1385
+
Gly
TCC
[ENA]
¡û
>C171067273
CP017762
Bacillota
Virgibacillus sp. 6R [CP017762]
373866
373939
+
Gly
TCC
-
¡û
>C171067311
CP017762
Bacillota
Virgibacillus sp. 6R [CP017762]
1610688
1610615
-
Gly
TCC
-
¡û
>C171067329
CP017762
Bacillota
Virgibacillus sp. 6R [CP017762]
923277
923204
-
Gly
TCC
-
¡û
>C171112112
CP020772
Bacillota
Halobacillus mangrovi KTB 131 [CP020772]
3870760
3870687
-
Gly
TCC
-
¡û
>C171112133
CP020772
Bacillota
Halobacillus mangrovi KTB 131 [CP020772]
3178027
3177954
-
Gly
TCC
-
¡û
>C015429
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
670052
670125
+
Gly
TCC
[Ensembl]
¡û
>C015447
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
1131160
1131233
+
Gly
TCC
[Ensembl]
¡û
>C015450
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
2139072
2138999
-
Gly
TCC
[Ensembl]
¡û
>W141093272
AVBB01000102
Bacillota
Priestia megaterium MSP20.1 [AVBB]
150
77
-
Gly
TCC
[ENA]
¡û
>W141093284
AVBB01000318
Bacillota
Priestia megaterium MSP20.1 [AVBB]
344
271
-
Gly
TCC
[ENA]
¡û
>W141093291
AVBB01000340
Bacillota
Priestia megaterium MSP20.1 [AVBB]
1648
1721
+
Gly
TCC
[ENA]
¡û
>W08009405
ABPF01000008
Bacillota
Exiguobacterium sp. AT1b [ABPF]
73333
73263
-
Gly
TCC
[ENA]
¡û
>W141263460
CCDH010000001
Bacillota
Halobacillus karajensis dabanensis [CCDH]
435037
434964
-
Gly
TCC
[ENA]
¡û
>W141263472
CCDH010000003
Bacillota
Halobacillus karajensis dabanensis [CCDH]
863071
862998
-
Gly
TCC
[ENA]
¡û
>W141263495
CCDH010000006
Bacillota
Halobacillus karajensis dabanensis [CCDH]
302
229
-
Gly
TCC
[ENA]
¡û
>C191098880
CP033046
Bacillota
Virgibacillus sp. Bac332 [CP033046]
1836862
1836935
+
Gly
TCC
-
¡û
>C191098898
CP033046
Bacillota
Virgibacillus sp. Bac332 [CP033046]
2442247
2442320
+
Gly
TCC
-
¡û
>C191098902
CP033046
Bacillota
Virgibacillus sp. Bac332 [CP033046]
3845493
3845420
-
Gly
TCC
-
¡û
>C191098953
CP033048
Bacillota
Virgibacillus sp. Bac330 [CP033048]
3224195
3224122
-
Gly
TCC
-
¡û
>C191098973
CP033048
Bacillota
Virgibacillus sp. Bac330 [CP033048]
1336278
1336205
-
Gly
TCC
-
¡û
>W141807056
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
113180
113107
-
Gly
TCC
[ENA]
¡û
>W1910371410
FUFM01000020
Bacillota
Virgibacillus pantothenticus Marseille-P1102 [FUFM]
182601
182674
+
Gly
TCC
[ENA]
¡û
>W1910371422
FUFM01000021
Bacillota
Virgibacillus pantothenticus Marseille-P1102 [FUFM]
2235
2162
-
Gly
TCC
[ENA]
¡û
>W1910371433
FUFM01000023
Bacillota
Virgibacillus pantothenticus Marseille-P1102 [FUFM]
207419
207346
-
Gly
TCC
[ENA]
¡û
>W1910371541
FUFO01000011
Bacillota
Oceanobacillus kimchii Marseille-P19319 [FUFO]
200475
200548
+
Gly
TCC
[ENA]
¡û
>W1910371543
FUFO01000011
Bacillota
Oceanobacillus kimchii Marseille-P19319 [FUFO]
1225097
1225024
-
Gly
TCC
[ENA]
¡û
>W1910399364
FUUZ01000016
Bacillota
Virgibacillus dokdonensis Marseille-P2545 [FUUZ]
464487
464560
+
Gly
TCC
[ENA]
¡û
>W1910399394
FUUZ01000016
Bacillota
Virgibacillus dokdonensis Marseille-P2545 [FUUZ]
1732383
1732310
-
Gly
TCC
[ENA]
¡û
>W1910399420
FUVA01000014
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
227718
227791
+
Gly
TCC
[ENA]
¡û
>W1910399443
FUVA01000018
Bacillota
Halobacillus massiliensis Marseille-P3554 [FUVA]
36618
36547
-
Gly
TCC
[ENA]
¡û
>C09106162
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2268526
2268453
-
Gly
TCC
[Ensembl]
¡û
>C141009945
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
678420
678490
+
Gly
TCC
[Ensembl]
¡û
>C141009946
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
678529
678599
+
Gly
TCC
[Ensembl]
¡û
>W1910896722
NFZX01000021
Bacillota
Virgibacillus dokdonensis AK90 [NFZX]
55526
55599
+
Gly
TCC
[ENA]
¡û
>W1910896742
NFZX01000033
Bacillota
Virgibacillus dokdonensis AK90 [NFZX]
39540
39613
+
Gly
TCC
[ENA]
¡û
>W1911243135
NSGH01000007
Bacillota
Salimicrobium humidisoli WN024 [NSGH]
131256
131329
+
Gly
TCC
[ENA]
¡û
>W1911504043
OESS01000002
Bacillota
Halobacillus sp. Marseille-P3879 [OESS]
1178380
1178307
-
Gly
TCC
[ENA]
¡û
>W1911504073
OESS01000004
Bacillota
Halobacillus sp. Marseille-P3879 [OESS]
501
428
-
Gly
TCC
[ENA]
¡û
>SRA1004396
SRR006906.19918
metagenomic water samples (SRP000427)
121
48
-
Gly
TCC
[SRA]
>W1810869836
QUAE01000002
Bacillota
Halobacillus trueperi KCTC 3686 [QUAE]
392456
392383
-
Gly
TCC
[ENA]
¡û
>W1810869867
QUAE01000021
Bacillota
Halobacillus trueperi KCTC 3686 [QUAE]
14736
14809
+
Gly
TCC
[ENA]
¡û
>W1510071278
CDGG01000001
Bacillota
Oceanobacillus oncorhynchi Oc5 [CDGG]
3857033
3856960
-
Gly
TCC
[ENA]
¡û
>W1511686083
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
40404
40334
-
Gly
TCC
[ENA]
¡û
>W1511686084
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
40295
40225
-
Gly
TCC
[ENA]
¡û
>W1511706264
LGTO01000005
Bacillota
Virgibacillus pantothenticus DSM 26 [LGTO]
874976
875049
+
Gly
TCC
[ENA]
¡û
>W1511706270
LGTO01000007
Bacillota
Virgibacillus pantothenticus DSM 26 [LGTO]
2532463
2532536
+
Gly
TCC
[ENA]
¡û
>C161034313
CP011361
Bacillota
Salimicrobium jeotgali MJ3 [CP011361]
2357755
2357682
-
Gly
TCC
-
¡û
>W1610067873
BCQW01000002
Bacillota
Amphibacillus sediminis NBRC 103570 [BCQW]
248
175
-
Gly
TCC
[ENA]
¡û
>W1610067896
BCQW01000049
Bacillota
Amphibacillus sediminis NBRC 103570 [BCQW]
1343
1270
-
Gly
TCC
[ENA]
¡û
>W1610589635
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
1413
1483
+
Gly
TCC
[ENA]
¡û
>W1610589636
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
1522
1592
+
Gly
TCC
[ENA]
¡û
>W1610739457
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
77099
77169
+
Gly
TCC
[ENA]
¡û
>W1610739458
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
77208
77278
+
Gly
TCC
[ENA]
¡û
>W1610767746
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1716
1786
+
Gly
TCC
[ENA]
¡û
>W1610767747
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1825
1895
+
Gly
TCC
[ENA]
¡û
>W1710065246
BCQW01000002
Bacillota
Amphibacillus sediminis NBRC 103570 [BCQW]
248
175
-
Gly
TCC
[ENA]
¡û
>W1710065269
BCQW01000049
Bacillota
Amphibacillus sediminis NBRC 103570 [BCQW]
1343
1270
-
Gly
TCC
[ENA]
¡û
>W1710511222
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1716
1786
+
Gly
TCC
[ENA]
¡û
>W1710511223
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1825
1895
+
Gly
TCC
[ENA]
¡û
>W1710519592
FNEV01000010
Bacillota
Salimicrobium halophilum [FNEV]
437
364
-
Gly
TCC
[ENA]
¡û
>W1710524755
FNIZ01000010
Bacillota
Halobacillus aidingensis [FNIZ]
104081
104008
-
Gly
TCC
[ENA]
¡û
>W1710524789
FNIZ01000032
Bacillota
Halobacillus aidingensis [FNIZ]
8419
8492
+
Gly
TCC
[ENA]
¡û
>W1710530435
FNOS01000006
Bacillota
Salimicrobium album [FNOS]
129258
129331
+
Gly
TCC
[ENA]
¡û
>W1710540488
FNWW01000002
Bacillota
Halobacillus karajensis [FNWW]
32550
32623
+
Gly
TCC
[ENA]
¡û
>W1710540497
FNWW01000006
Bacillota
Halobacillus karajensis [FNWW]
9656
9729
+
Gly
TCC
[ENA]
¡û
>W1710540520
FNWW01000011
Bacillota
Halobacillus karajensis [FNWW]
100576
100649
+
Gly
TCC
[ENA]
¡û
>W1710586344
FQXD01000001
Bacillota
Virgibacillus chiguensis [FQXD]
426503
426576
+
Gly
TCC
[ENA]
¡û
>W1710586391
FQXD01000024
Bacillota
Virgibacillus chiguensis [FQXD]
38046
38119
+
Gly
TCC
[ENA]
¡û
>W1710708915
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
1413
1483
+
Gly
TCC
[ENA]
¡û
>W1710708916
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
1522
1592
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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