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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.503285 (23 seq.)
>W1711413987
MGXJ01000040
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_37_9 [MGXJ]
898
823
-
Lys
TTT
[ENA]
¡û
>W1711500022
MKQS01000012
Gammaproteobacteria
Acinetobacter towneri [MKQS]
94425
94350
-
Lys
TTT
[ENA]
¡û
>W131099469
AOTJ01000001
Gammaproteobacteria
Acinetobacter sp. MDS7A [AOTJ]
27206
27281
+
Lys
TTT
[ENA]
¡û
>W131099470
AOTJ01000001
Gammaproteobacteria
Acinetobacter sp. MDS7A [AOTJ]
27334
27409
+
Lys
TTT
[ENA]
¡û
>W131115783
APPY01000067
Gammaproteobacteria
Acinetobacter towneri DSM 14962 = CIP 107472 [APPY]
151824
151749
-
Lys
TTT
[ENA]
¡û
>W131115784
APPY01000067
Gammaproteobacteria
Acinetobacter towneri DSM 14962 = CIP 107472 [APPY]
151727
151652
-
Lys
TTT
[ENA]
¡û
>WENV181227433
OFDN01010233
[OFDN] hot springs metagenome; Water
3401
3326
-
Lys
TTT
[ENA]
¢þ
>WENV181839455
OGVO01001922
[OGVO] freshwater metagenome; freshwater
2197
2122
-
Lys
TTT
[ENA]
¢þ
>WENV170578228
FUFK010011493
[FUFK] metagenome; unknown
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV170725027
LSQX01328096
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
78
3
-
Lys
TTT
[ENA]
¢þ
>C181033874
CP018889
Gammaproteobacteria
Beggiatoa leptomitoformis D-401 [CP018889]
3103390
3103315
-
Lys
TTT
-
¡û
>C181136806
CP026616
Gammaproteobacteria
Acinetobacter sp. SWBY1 [CP026616]
2443556
2443481
-
Lys
TTT
-
¡û
>C181136807
CP026616
Gammaproteobacteria
Acinetobacter sp. SWBY1 [CP026616]
2443459
2443384
-
Lys
TTT
-
¡û
>C181136808
CP026616
Gammaproteobacteria
Acinetobacter sp. SWBY1 [CP026616]
2443331
2443256
-
Lys
TTT
-
¡û
>W141562578
JHZH01000002
Gammaproteobacteria
Acinetobacter towneri DSM 14962 = CIP 107472 [JHZH]
119486
119411
-
Lys
TTT
[ENA]
¡û
>W141562579
JHZH01000002
Gammaproteobacteria
Acinetobacter towneri DSM 14962 = CIP 107472 [JHZH]
119358
119283
-
Lys
TTT
[ENA]
¡û
>W1911141613
NOZT01000007
Gammaproteobacteria
Acinetobacter sp. YT-02 [NOZT]
15371
15446
+
Lys
TTT
[ENA]
¡û
>W1911141614
NOZT01000007
Gammaproteobacteria
Acinetobacter sp. YT-02 [NOZT]
15499
15574
+
Lys
TTT
[ENA]
¡û
>W1911141615
NOZT01000007
Gammaproteobacteria
Acinetobacter sp. YT-02 [NOZT]
15596
15671
+
Lys
TTT
[ENA]
¡û
>W1510012582
BBNL01000002
Gammaproteobacteria
Acinetobacter towneri KCTC 12419 [BBNL]
89346
89421
+
Lys
TTT
[ENA]
¡û
>W1510012583
BBNL01000002
Gammaproteobacteria
Acinetobacter towneri KCTC 12419 [BBNL]
89443
89518
+
Lys
TTT
[ENA]
¡û
>W1510012584
BBNL01000002
Gammaproteobacteria
Acinetobacter towneri KCTC 12419 [BBNL]
89571
89646
+
Lys
TTT
[ENA]
¡û
>C161041410
CP012373
Gammaproteobacteria
Beggiatoa leptomitoformis D-402 [CP012373]
2616243
2616318
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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