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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50395 (94 seq.)
>W1710869658
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
145954
146041
+
Ser
GGA
[ENA]
¡û
>W1710874689
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1225895
1225982
+
Ser
GGA
[ENA]
¡û
>W1710875043
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
381905
381818
-
Ser
GGA
[ENA]
¡û
>W1710876174
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
145838
145925
+
Ser
GGA
[ENA]
¡û
>W1711173299
LWCT01000010
Actinomycetota
Plantibacter sp. H53 [LWCT]
7981
8068
+
Ser
GGA
[ENA]
¡û
>W1711461515
MJGW01000001
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
381730
381643
-
Ser
GGA
[ENA]
¡û
>WENV011297
AACY020307990
Marine microbial communities from Global Ocean Sampling (GOS)
338
251
-
Ser
GGA
[ENA]
>WENV016300
AACY020460418
Marine microbial communities from Global Ocean Sampling (GOS)
1396
1307
-
Ser
GGA
[ENA]
>WENV180108811
OAPI01001119
[OAPI] marine metagenome; ENVO.00002150
467
380
-
Ser
GGA
[ENA]
¡û
>WENV180209496
OBAL01001812
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
216
301
+
Ser
GGA
[ENA]
¡û
>WENV180376914
OBOM01147887
[OBOM] marine metagenome; Seawater
379
294
-
Ser
GGA
[ENA]
¡û
>WENV181391595
OFRT01025754
[OFRT] seawater metagenome; seawater
323
236
-
Ser
GGA
[ENA]
¡û
>WENV181392931
OFRX01018208
[OFRX] seawater metagenome; seawater
648
735
+
Ser
GGA
[ENA]
¡û
>W141188419
AYMR01000021
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
22801
22888
+
Ser
GGA
[ENA]
¡û
>WENV019391
AACY020531407
Marine microbial communities from Global Ocean Sampling (GOS)
540
453
-
Ser
GGA
[ENA]
>WENV019447
AACY020532559
Marine microbial communities from Global Ocean Sampling (GOS)
2000
2089
+
Ser
GGA
[ENA]
>WENV183619092
OOFP01025489
[OOFP] marine metagenome; seawater
323
236
-
Ser
GGA
[ENA]
¡û
>WENV183629300
OOGP01018362
[OOGP] marine metagenome; seawater
257
170
-
Ser
GGA
[ENA]
¡û
>WENV170568452
FLMP01041035
[FLMP] seawater metagenome; seawater
648
735
+
Ser
GGA
[ENA]
¡û
>WENV170597581
FUWD010007141
[FUWD] metagenome; unknown
376
289
-
Ser
GGA
[ENA]
¡û
>WENV170597582
FUWD010007143
[FUWD] metagenome; unknown
629
542
-
Ser
GGA
[ENA]
¡û
>WENV170614500
FUWD012834994
[FUWD] metagenome; unknown
691
778
+
Ser
GGA
[ENA]
¡û
>WENV170614501
FUWD012834995
[FUWD] metagenome; unknown
131
218
+
Ser
GGA
[ENA]
¡û
>WENV170627052
FUWD013230978
[FUWD] metagenome; unknown
106
19
-
Ser
GGA
[ENA]
¡û
>WENV170627054
FUWD013230984
[FUWD] metagenome; unknown
1062
975
-
Ser
GGA
[ENA]
¡û
>WENV170627550
FUWD013233386
[FUWD] metagenome; unknown
106
19
-
Ser
GGA
[ENA]
¡û
>WENV170627556
FUWD013233452
[FUWD] metagenome; unknown
1062
975
-
Ser
GGA
[ENA]
¡û
>WENV170949521
MEHZ011427723
[MEHZ] marine metagenome; marine surface water
4279
4366
+
Ser
GGA
[ENA]
¡û
>C181143958
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
538142
538055
-
Ser
GGA
-
¡û
>C191101005
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
4004840
4004927
+
Ser
GGA
-
¡û
>C191182542
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
959778
959865
+
Ser
GGA
-
¡û
>W1911671589
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
925558
925645
+
Ser
GGA
[ENA]
¡û
>W1911823592
QZVS01000055
Actinomycetota
Cryobacterium sp. Hh39 [QZVS]
7542
7629
+
Ser
GGA
[ENA]
¡û
>W1810058102
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
1505363
1505276
-
Ser
GGA
[ENA]
¡û
>SRA1023335
SRR035084.73123
454 Sequencing (SRP001805)
384
297
-
Ser
GGA
[SRA]
>SRA1024365
SRR035084.308484
454 Sequencing (SRP001805)
382
469
+
Ser
GGA
[SRA]
>SRA1025008
SRR035084.457472
454 Sequencing (SRP001805)
203
116
-
Ser
GGA
[SRA]
>SRA1025112
SRR035084.487158
454 Sequencing (SRP001805)
269
182
-
Ser
GGA
[SRA]
>SRA1025156
SRR035084.501337
454 Sequencing (SRP001805)
158
71
-
Ser
GGA
[SRA]
>SRA1025180
SRR035084.509506
454 Sequencing (SRP001805)
160
73
-
Ser
GGA
[SRA]
>W2010310045
CABWLU010000002
Actinomycetota
Plantibacter sp. T3 [CABWLU]
15054
15141
+
Ser
GGA
[ENA]
¡û
>W2010472272
JAAHFF010000002
Actinomycetota
Microbacterium sp. HY54 [JAAHFF]
443340
443253
-
Ser
GGA
[ENA]
¡û
>W2010472295
JAAHFG010000001
Actinomycetota
Microbacterium sp. HY82 [JAAHFG]
888674
888587
-
Ser
GGA
[ENA]
¡û
>W2010472361
JAAHFH010000003
Actinomycetota
Microbacterium sp. HY60 [JAAHFH]
84719
84806
+
Ser
GGA
[ENA]
¡û
>W2010472378
JAAHFI010000001
Actinomycetota
Microbacterium sp. HY89 [JAAHFI]
588554
588641
+
Ser
GGA
[ENA]
¡û
>W2010514935
JAAMOX010000003
Actinomycetota
Lysinibacter cavernae DSM 27960 [JAAMOX]
353127
353214
+
Ser
GGA
[ENA]
¡û
>W2011249979
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
925558
925645
+
Ser
GGA
[ENA]
¡û
>SRA1043864
SRR035092.187694
454 Sequencing (SRP001813)
401
314
-
Ser
GGA
[SRA]
>W2011350582
QZVS01000055
Actinomycetota
Cryobacterium sp. Hh39 [QZVS]
7542
7629
+
Ser
GGA
[ENA]
¡û
>W2011373264
RBIC01000014
Actinomycetota
Plantibacter sp. YR521 [RBIC]
92953
92866
-
Ser
GGA
[ENA]
¡û
>W2011403418
RCUV01000002
Actinomycetota
Mycetocola manganoxydans CCTCC AB209002 [RCUV]
143559
143646
+
Ser
GGA
[ENA]
¡û
>W2011404206
RCWJ01000003
Actinomycetota
Mycetocola zhadangensis ZD1-4 [RCWJ]
391413
391500
+
Ser
GGA
[ENA]
¡û
>W2011442004
RJUO01000005
Actinomycetota
Frondihabitans sp. PhB188 [RJUO]
292928
292843
-
Ser
GGA
[ENA]
¡û
>W2011447528
RKHL01000001
Actinomycetota
Plantibacter flavus DSM 14012 [RKHL]
3019536
3019623
+
Ser
GGA
[ENA]
¡û
>W2011453488
RKQM01000001
Actinomycetota
Frondihabitans sp. PhB153 [RKQM]
1637474
1637389
-
Ser
GGA
[ENA]
¡û
>W2011454115
RKQW01000001
Actinomycetota
Frondihabitans sp. PhB161 [RKQW]
1637379
1637294
-
Ser
GGA
[ENA]
¡û
>SRA1045880
SRR035093.188248
454 Sequencing (SRP001814)
214
127
-
Ser
GGA
[SRA]
>SRA1045972
SRR035093.207716
454 Sequencing (SRP001814)
173
260
+
Ser
GGA
[SRA]
>SRA1046451
SRR035093.309425
454 Sequencing (SRP001814)
310
397
+
Ser
GGA
[SRA]
>W2012023058
VFRB01000001
Actinomycetota
Microbacterium lindanitolerans DSM 22422 [VFRB]
2476054
2475967
-
Ser
GGA
[ENA]
¡û
>W2012125653
VRTB01000001
Actinomycetota
Salinibacterium sp. dk5596 [VRTB]
732984
732897
-
Ser
GGA
[ENA]
¡û
>W2110021335
BMEK01000003
Actinomycetota
Mycetocola zhadangensis CGMCC 1.12042 [BMEK]
58354
58267
-
Ser
GGA
[ENA]
¡û
>W2110047699
BMXM01000002
Actinomycetota
Mycetocola manganoxydans KCTC 19753 [BMXM]
75725
75638
-
Ser
GGA
[ENA]
¡û
>W2110288802
JACYNV010000002
Actinomycetota
Plantibacter sp. CFBP 8775 CFBP8775 [JACYNV]
955767
955854
+
Ser
GGA
[ENA]
¡û
>W2110289995
JACYTS010000003
Actinomycetota
Plantibacter sp. CFBP 8798 CFBP8798 [JACYTS]
453454
453541
+
Ser
GGA
[ENA]
¡û
>W2110290093
JACYTU010000010
Actinomycetota
Plantibacter sp. CFBP 8804 CFBP8804 [JACYTU]
78059
77972
-
Ser
GGA
[ENA]
¡û
>W2110329633
JADKSF010000003
Actinomycetota
Frondihabitans sp. VKM Ac-2883 [JADKSF]
257206
257291
+
Ser
GGA
[ENA]
¡û
>W2110329793
JADKSI010000003
Actinomycetota
Plantibacter sp. VKM Ac-2876 [JADKSI]
642345
642258
-
Ser
GGA
[ENA]
¡û
>W2110329832
JADKSJ010000002
Actinomycetota
Plantibacter sp. VKM Ac-2880 [JADKSJ]
754651
754738
+
Ser
GGA
[ENA]
¡û
>W2110329888
JADKSK010000002
Actinomycetota
Plantibacter sp. VKM Ac-2885 [JADKSK]
675120
675033
-
Ser
GGA
[ENA]
¡û
>W2110438089
JAEPES010000005
Actinomycetota
Lacisediminihabitans changchengi G11-30 [JAEPES]
19422
19336
-
Ser
GGA
[ENA]
¡û
>C201117306
CP042856
Actinomycetota
Salinibacterium sp. dk2585 [CP042856]
705711
705624
-
Ser
GGA
-
¡û
>C211143537
CP061169
Actinomycetota
Microbacterium sp. HY60 [CP061169]
2449599
2449686
+
Ser
GGA
-
¡û
>C211143582
CP061170
Actinomycetota
Microbacterium sp. HY82 [CP061170]
2601119
2601206
+
Ser
GGA
-
¡û
>C241011907
AP027732
Actinomycetota
Frondihabitans sucicola NBRC 108728 [AP027732]
3654536
3654621
+
Ser
GGA
-
¡û
>W2130008127
CAJGWQ010000013
Actinomycetota
Gulosibacter sp. 401352-2018 [CAJGWQ]
46322
46237
-
Ser
GGA
[ENA]
¡û
>W2130018375
JACYTW010000068
Actinomycetota
Plantibacter sp. CFBP 13570 CFBP13570 [JACYTW]
2640
2727
+
Ser
GGA
[ENA]
¡û
>W121063453
AJKR01000001
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
72466
72379
-
Ser
GGA
[ENA]
¡û
>WENV070307
AACY023804759
Marine microbial communities from Global Ocean Sampling (GOS)
321
234
-
Ser
GGA
[ENA]
>WENV070563
AACY023813823
Marine microbial communities from Global Ocean Sampling (GOS)
1003
916
-
Ser
GGA
[ENA]
>WENV070602
AACY023816002
Marine microbial communities from Global Ocean Sampling (GOS)
1084
997
-
Ser
GGA
[ENA]
>WENV070774
AACY023822355
Marine microbial communities from Global Ocean Sampling (GOS)
600
687
+
Ser
GGA
[ENA]
>WENV070778
AACY023822507
Marine microbial communities from Global Ocean Sampling (GOS)
877
964
+
Ser
GGA
[ENA]
>WENV070908
AACY023827838
Marine microbial communities from Global Ocean Sampling (GOS)
602
689
+
Ser
GGA
[ENA]
>W1610732004
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
145954
146041
+
Ser
GGA
[ENA]
¡û
>W1610737035
LMNV01000002
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
1225895
1225982
+
Ser
GGA
[ENA]
¡û
>W1610737389
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
381905
381818
-
Ser
GGA
[ENA]
¡û
>W1610738520
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
145838
145925
+
Ser
GGA
[ENA]
¡û
>W1610981904
LWCT01000010
Actinomycetota
Plantibacter sp. H53 [LWCT]
7981
8068
+
Ser
GGA
[ENA]
¡û
>W1710534567
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
2024217
2024130
-
Ser
GGA
[ENA]
¡û
>W1710570892
FOVM01000001
Actinomycetota
Mycetocola miduiensis [FOVM]
213341
213428
+
Ser
GGA
[ENA]
¡û
>W1710603982
FUZO01000002
Actinomycetota
Plantibacter cousiniae [FUZO]
606388
606301
-
Ser
GGA
[ENA]
¡û
>W1710608084
FXAP01000004
Actinomycetota
Plantibacter flavus [FXAP]
312238
312325
+
Ser
GGA
[ENA]
¡û
>W1710609366
FXWJ01000005
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
380938
380851
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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