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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504629 (122 seq.)
>W1711724363
MTQD01000002
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
45848
45923
+
Lys
TTT
[ENA]
¡û
>W1711724365
MTQD01000002
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
46154
46229
+
Lys
TTT
[ENA]
¡û
>W1711724366
MTQD01000002
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
46314
46389
+
Lys
TTT
[ENA]
¡û
>W1711724367
MTQD01000002
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
46473
46548
+
Lys
TTT
[ENA]
¡û
>W1711724369
MTQD01000002
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
46772
46847
+
Lys
TTT
[ENA]
¡û
>C171097294
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
3261714
3261789
+
Lys
TTT
-
¡û
>C171097298
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
3262308
3262383
+
Lys
TTT
-
¡û
>C171097300
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
3262605
3262680
+
Lys
TTT
-
¡û
>WENV180396979
OBPW01057159
[OBPW] marine metagenome; seawater
8
83
+
Lys
TTT
[ENA]
¢þ
>W141086572
AUTI01000455
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
906
981
+
Lys
TTT
[ENA]
¡û
>W141086574
AUTI01000455
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
1212
1287
+
Lys
TTT
[ENA]
¡û
>W141086576
AUTI01000455
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
1532
1607
+
Lys
TTT
[ENA]
¡û
>W141086578
AUTI01000455
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
1791
1866
+
Lys
TTT
[ENA]
¡û
>W141086671
AUTJ01000243
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
25571
25646
+
Lys
TTT
[ENA]
¡û
>W141086673
AUTJ01000243
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
25877
25952
+
Lys
TTT
[ENA]
¡û
>W141086674
AUTJ01000243
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
26038
26113
+
Lys
TTT
[ENA]
¡û
>W141086675
AUTJ01000243
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
26197
26272
+
Lys
TTT
[ENA]
¡û
>W141086677
AUTJ01000243
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
26495
26570
+
Lys
TTT
[ENA]
¡û
>W141086763
AUTK01000564
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
1434
1359
-
Lys
TTT
[ENA]
¡û
>W141086765
AUTK01000564
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
1128
1053
-
Lys
TTT
[ENA]
¡û
>W141086767
AUTK01000564
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
808
733
-
Lys
TTT
[ENA]
¡û
>W141086769
AUTK01000564
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
549
474
-
Lys
TTT
[ENA]
¡û
>W141086790
AUTL01000148
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
53826
53901
+
Lys
TTT
[ENA]
¡û
>W141086792
AUTL01000148
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
54132
54207
+
Lys
TTT
[ENA]
¡û
>W141086794
AUTL01000148
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
54452
54527
+
Lys
TTT
[ENA]
¡û
>W141086796
AUTL01000148
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
54712
54787
+
Lys
TTT
[ENA]
¡û
>W141086907
AUTM01000234
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
6042
6117
+
Lys
TTT
[ENA]
¡û
>W141086909
AUTM01000234
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
6348
6423
+
Lys
TTT
[ENA]
¡û
>W141086911
AUTM01000234
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
6668
6743
+
Lys
TTT
[ENA]
¡û
>W141086913
AUTM01000234
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
6928
7003
+
Lys
TTT
[ENA]
¡û
>W141086980
AUTN01000076
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
7684
7759
+
Lys
TTT
[ENA]
¡û
>W141086988
AUTN01000100
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
67815
67740
-
Lys
TTT
[ENA]
¡û
>W141086990
AUTN01000100
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
67510
67435
-
Lys
TTT
[ENA]
¡û
>W141087002
AUTN01000122
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
871
796
-
Lys
TTT
[ENA]
¡û
>W141087004
AUTN01000122
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
565
490
-
Lys
TTT
[ENA]
¡û
>W141087005
AUTN01000122
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
405
330
-
Lys
TTT
[ENA]
¡û
>W141087006
AUTN01000122
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
246
171
-
Lys
TTT
[ENA]
¡û
>W141087209
AUTP01000363
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
19769
19694
-
Lys
TTT
[ENA]
¡û
>W141087211
AUTP01000363
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
19463
19388
-
Lys
TTT
[ENA]
¡û
>W141087212
AUTP01000363
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
19302
19227
-
Lys
TTT
[ENA]
¡û
>W141087213
AUTP01000363
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
19143
19068
-
Lys
TTT
[ENA]
¡û
>W141087215
AUTP01000363
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
18885
18810
-
Lys
TTT
[ENA]
¡û
>W141087281
AUTQ01000137
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
5362
5287
-
Lys
TTT
[ENA]
¡û
>W141087298
AUTQ01000206
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
9826
9901
+
Lys
TTT
[ENA]
¡û
>W141087301
AUTQ01000206
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
10257
10332
+
Lys
TTT
[ENA]
¡û
>W141087357
AUTR01000034
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
70590
70515
-
Lys
TTT
[ENA]
¡û
>W141087359
AUTR01000034
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
70284
70209
-
Lys
TTT
[ENA]
¡û
>W141087360
AUTR01000034
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
70124
70049
-
Lys
TTT
[ENA]
¡û
>W141087361
AUTR01000034
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
69965
69890
-
Lys
TTT
[ENA]
¡û
>W141087363
AUTR01000034
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
69667
69592
-
Lys
TTT
[ENA]
¡û
>W141087472
AUTS01000026
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
156
231
+
Lys
TTT
[ENA]
¡û
>W141087475
AUTS01000030
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
85410
85485
+
Lys
TTT
[ENA]
¡û
>W141087477
AUTS01000030
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
85716
85791
+
Lys
TTT
[ENA]
¡û
>W141087478
AUTS01000030
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
85876
85951
+
Lys
TTT
[ENA]
¡û
>W141087479
AUTS01000030
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
86035
86110
+
Lys
TTT
[ENA]
¡û
>W141087481
AUTS01000030
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
86333
86408
+
Lys
TTT
[ENA]
¡û
>WENV170673116
LAZR01006669
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
231
156
-
Lys
TTT
[ENA]
¢þ
>C181010186
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2428899
2428824
-
Lys
TTT
-
¡û
>C181010188
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2428593
2428518
-
Lys
TTT
-
¡û
>C181010189
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2428432
2428357
-
Lys
TTT
-
¡û
>C181010190
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2428273
2428198
-
Lys
TTT
-
¡û
>C181010192
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
2428014
2427939
-
Lys
TTT
-
¡û
>C181012597
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
2445128
2445053
-
Lys
TTT
-
¡û
>C181012601
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
2444537
2444462
-
Lys
TTT
-
¡û
>C181012603
CP012737
Gammaproteobacteria
Pseudoalteromonas sp. 1_2015MBL_MicDiv [CP012737, CP012738]
2444278
2444203
-
Lys
TTT
-
¡û
>C191179297
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
1074538
1074613
+
Lys
TTT
-
¡û
>C191179299
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
1074843
1074918
+
Lys
TTT
-
¡û
>C191179301
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
1075163
1075238
+
Lys
TTT
-
¡û
>C191179303
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
1075422
1075497
+
Lys
TTT
-
¡û
>W141621758
JJNY01000022
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
84
159
+
Lys
TTT
[ENA]
¡û
>W141621768
JJNY01000038
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
48257
48332
+
Lys
TTT
[ENA]
¡û
>W141621844
JJNZ01000002
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
70020
69945
-
Lys
TTT
[ENA]
¡û
>W141621886
JJNZ01000057
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
48557
48632
+
Lys
TTT
[ENA]
¡û
>W141621916
JJNZ01000144
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
414
339
-
Lys
TTT
[ENA]
¡û
>W141621918
JJNZ01000144
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
155
80
-
Lys
TTT
[ENA]
¡û
>W1810155642
PJAV01000129
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
30520
30445
-
Lys
TTT
[ENA]
¡û
>W1810155644
PJAV01000129
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
30214
30139
-
Lys
TTT
[ENA]
¡û
>W1810155645
PJAV01000129
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
30054
29979
-
Lys
TTT
[ENA]
¡û
>W1810155646
PJAV01000129
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
29895
29820
-
Lys
TTT
[ENA]
¡û
>W1810155648
PJAV01000129
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
29637
29562
-
Lys
TTT
[ENA]
¡û
>W1810156617
PJBK01000088
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
5405
5330
-
Lys
TTT
[ENA]
¡û
>W1810156619
PJBK01000088
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
5099
5024
-
Lys
TTT
[ENA]
¡û
>W1810156620
PJBK01000088
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
4938
4863
-
Lys
TTT
[ENA]
¡û
>W1810156621
PJBK01000088
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
4779
4704
-
Lys
TTT
[ENA]
¡û
>W1810156623
PJBK01000088
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
4520
4445
-
Lys
TTT
[ENA]
¡û
>W1810157007
PJBQ01000049
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
67112
67037
-
Lys
TTT
[ENA]
¡û
>W1810157009
PJBQ01000049
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
66806
66731
-
Lys
TTT
[ENA]
¡û
>W1810157010
PJBQ01000049
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
66645
66570
-
Lys
TTT
[ENA]
¡û
>W1810157011
PJBQ01000049
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
66486
66411
-
Lys
TTT
[ENA]
¡û
>W1810157013
PJBQ01000049
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
66227
66152
-
Lys
TTT
[ENA]
¡û
>W1810157089
PJBR01000029
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
5064
4989
-
Lys
TTT
[ENA]
¡û
>W1810157091
PJBR01000029
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
4758
4683
-
Lys
TTT
[ENA]
¡û
>W1810157092
PJBR01000029
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
4598
4523
-
Lys
TTT
[ENA]
¡û
>W1810157093
PJBR01000029
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
4439
4364
-
Lys
TTT
[ENA]
¡û
>W1810157095
PJBR01000029
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
4181
4106
-
Lys
TTT
[ENA]
¡û
>W1511399087
JTDZ01000029
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
355233
355158
-
Lys
TTT
[ENA]
¡û
>W1511399089
JTDZ01000029
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
354928
354853
-
Lys
TTT
[ENA]
¡û
>W1511399091
JTDZ01000029
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
354608
354533
-
Lys
TTT
[ENA]
¡û
>W1511399093
JTDZ01000029
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
354349
354274
-
Lys
TTT
[ENA]
¡û
>W11121983
ADOP01000030
Gammaproteobacteria
Pseudoalteromonas distincta ANT/505 [ADOP]
141
66
-
Lys
TTT
[ENA]
¡û
>W1511479604
JWIG01000029
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
358811
358736
-
Lys
TTT
[ENA]
¡û
>W1511479606
JWIG01000029
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
358506
358431
-
Lys
TTT
[ENA]
¡û
>W1511479608
JWIG01000029
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
358186
358111
-
Lys
TTT
[ENA]
¡û
>W1511479610
JWIG01000029
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
357927
357852
-
Lys
TTT
[ENA]
¡û
>W1511518621
JXYD01000070
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
338
263
-
Lys
TTT
[ENA]
¡û
>W1511518634
JXYD01000171
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
92
167
+
Lys
TTT
[ENA]
¡û
>W1511518636
JXYD01000171
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
351
426
+
Lys
TTT
[ENA]
¡û
>C161051952
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
1544585
1544660
+
Lys
TTT
-
¡û
>C161051956
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
1545173
1545248
+
Lys
TTT
-
¡û
>C161051958
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
1545432
1545507
+
Lys
TTT
-
¡û
>W121024752
AHBY01000011
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
51029
51104
+
Lys
TTT
[ENA]
¡û
>W121024753
AHBY01000011
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
51189
51264
+
Lys
TTT
[ENA]
¡û
>W121024755
AHBY01000011
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
51495
51570
+
Lys
TTT
[ENA]
¡û
>W121024757
AHBY01000011
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
51756
51831
+
Lys
TTT
[ENA]
¡û
>W121024758
AHBY01000011
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
51915
51990
+
Lys
TTT
[ENA]
¡û
>W121024760
AHBY01000011
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
52174
52249
+
Lys
TTT
[ENA]
¡û
>W121024762
AHBY01000011
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
52474
52549
+
Lys
TTT
[ENA]
¡û
>W121123037
BADT01000077
Gammaproteobacteria
Pseudoalteromonas sp. BSi20652 [BADT]
15959
16034
+
Lys
TTT
[ENA]
¡û
>W121123158
BADV01000011
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
50781
50856
+
Lys
TTT
[ENA]
¡û
>W121123160
BADV01000011
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
51087
51162
+
Lys
TTT
[ENA]
¡û
>W121123161
BADV01000011
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
51248
51323
+
Lys
TTT
[ENA]
¡û
>W121123367
BADY01000092
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
132
57
-
Lys
TTT
[ENA]
¡û
Select
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(Sample source for ENV)
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