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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504834 (17 seq.)
>W131086649
AOBT01000022
Myxococcota
Myxococcus xanthus DZF1 [AOBT]
164167
164239
+
Thr
TGT
[ENA]
¡û
>C014485
CP000113
Myxococcota
Myxococcus xanthus DK 1622 [CP000113]
3593089
3593161
+
Thr
TGT
[Ensembl]
¡û
>WENV180260594
OBEQ011213810
[OBEQ] groundwater metagenome; groundwater
282
354
+
Thr
TGT
[ENA]
¢þ
>WENV170993471
MWWB01317455
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
91
163
+
Thr
TGT
[ENA]
¢þ
>C181060626
CP022203
Myxococcota
Corallococcus macrosporus DSM 14697 [CP022203]
3605956
3606028
+
Thr
TGT
-
¡û
>C191013121
CP017169
Myxococcota
Myxococcus xanthus GH3.5.6c2 [CP017169]
3640352
3640424
+
Thr
TGT
-
¡û
>C191013186
CP017170
Myxococcota
Myxococcus xanthus GH5.1.9c20 [CP017170]
3527104
3527176
+
Thr
TGT
-
¡û
>C191013252
CP017171
Myxococcota
Myxococcus xanthus KF3.2.8c11 [CP017171]
3384535
3384607
+
Thr
TGT
-
¡û
>C191013317
CP017172
Myxococcota
Myxococcus xanthus KF4.3.9c1 [CP017172]
3582107
3582179
+
Thr
TGT
-
¡û
>C191013382
CP017173
Myxococcota
Myxococcus xanthus MC3.3.5c16 [CP017173]
3568652
3568724
+
Thr
TGT
-
¡û
>C191013447
CP017174
Myxococcota
Myxococcus xanthus MC3.5.9c15 [CP017174]
3568652
3568724
+
Thr
TGT
-
¡û
>C151091040
CP012109
Myxococcota
Myxococcus hansupus mixupus [CP012109]
4942168
4942096
-
Thr
TGT
[Ensembl]
¡û
>C11114314
CP002830
Myxococcota
Corallococcus macrosporus HW-1 [CP002830]
5487262
5487334
+
Thr
TGT
[Ensembl]
¡û
>W121102887
AKXT01000050
Myxococcota
Myxococcus hansupus DSM 436 [AKXT]
123056
123128
+
Thr
TGT
[ENA]
¡û
>W121103121
AKYI01000852
Myxococcota
Myxococcus xanthus DZ2 [AKYI]
497
425
-
Thr
TGT
[ENA]
¡û
>W1710513730
FNAJ01000012
Myxococcota
Myxococcus virescens [FNAJ]
230535
230607
+
Thr
TGT
[ENA]
¡û
>W1710529806
FNOH01000011
Myxococcota
Myxococcus xanthus [FNOH]
526
454
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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