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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506536 (33 seq.)
>W1710821588
LKTP01000003
Bacteroidota
Salegentibacter mishustinae [LKTP]
67097
67024
-
Cys
GCA
[ENA]
¡û
>W131164184
ARAI01000034
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
176283
176210
-
Cys
GCA
[ENA]
¡û
>W131229952
AUHF01000001
Bacteroidota
Christiangramia portivictoriae DSM 23547 [AUHF]
90039
90112
+
Cys
GCA
[ENA]
¡û
>W1711696238
MSJR01000001
Bacteroidota
Salegentibacter sediminis K5023 [MSJR]
104226
104299
+
Cys
GCA
[ENA]
¡û
>C171047808
CP016359
Bacteroidota
Christiangramia flava JLT2011 [CP016359]
1600511
1600584
+
Cys
GCA
-
¡û
>W141200486
AYXY01000026
Bacteroidota
Zhouia amylolytica AD3 [AYXY]
115624
115697
+
Cys
GCA
[ENA]
¡û
>WENV182567440
OJEO01001071
[OJEO] seawater metagenome; Sea water
7868
7939
+
Cys
GCA
[ENA]
¢þ
>WENV170121446
CENM01023757
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV170147265
CENZ01126753
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
617
690
+
Cys
GCA
[ENA]
¢þ
>WENV170276884
CERO01052279
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
498
571
+
Cys
GCA
[ENA]
¢þ
>C181063584
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
1202336
1202265
-
Cys
GCA
-
¡û
>C181063887
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
1527443
1527514
+
Cys
GCA
-
¡û
>C181145116
CP027062
Bacteroidota
Pukyongia salina RR4-38 [CP027062]
1167225
1167154
-
Cys
GCA
-
¡û
>C181196545
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
1157734
1157805
+
Cys
GCA
-
¡û
>C191213492
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
1741365
1741294
-
Cys
GCA
-
¡û
>W141821585
JQNQ01000001
Bacteroidota
Salegentibacter sp. Hel_I_6 [JQNQ]
2087942
2088015
+
Cys
GCA
[ENA]
¡û
>W1910626965
LKTR01000021
Bacteroidota
Salegentibacter salarius KCTC 12974 [LKTR]
55872
55801
-
Cys
GCA
[ENA]
¡û
>W1910626986
LKTS01000001
Bacteroidota
Salegentibacter salinarum KCTC 12975 [LKTS]
219164
219235
+
Cys
GCA
[ENA]
¡û
>W1910634571
LLKN01000002
Bacteroidota
Salegentibacter mishustinae DSM 23404 [LLKN]
519693
519764
+
Cys
GCA
[ENA]
¡û
>W1910857449
NBWU01000001
Bacteroidota
Sediminicola luteus HQA918 [NBWU]
1136105
1136176
+
Cys
GCA
[ENA]
¡û
>W1911139356
NOXV01000146
Bacteroidota
Flavobacterium cyanobacteriorum TH021 [NOXV]
2159
2230
+
Cys
GCA
[ENA]
¡û
>W1810356814
PVNF01000004
Bacteroidota
Salegentibacter salegens DSM 5424 [PVNF]
93121
93192
+
Cys
GCA
[ENA]
¡û
>W1810907897
QVID01000001
Bacteroidota
Marixanthomonas ophiurae KMM 3046 [QVID]
833874
833945
+
Cys
GCA
[ENA]
¡û
>W1510076189
CDOE01000062
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
27744
27817
+
Cys
GCA
[ENA]
¡û
>W1510076211
CDOF01000001
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
89778
89705
-
Cys
GCA
[ENA]
¡û
>W1510076288
CDOG01000078
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
89820
89747
-
Cys
GCA
[ENA]
¡û
>W1510076321
CDOH01000130
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
41011
41082
+
Cys
GCA
[ENA]
¡û
>W1510076331
CDOI01000002
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
48219
48290
+
Cys
GCA
[ENA]
¡û
>W1510076459
CDOL01000135
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
10859
10788
-
Cys
GCA
[ENA]
¡û
>W1610685550
LKTP01000003
Bacteroidota
Salegentibacter mishustinae [LKTP]
67097
67024
-
Cys
GCA
[ENA]
¡û
>W1710561635
FOOH01000013
Bacteroidota
Salegentibacter agarivorans [FOOH]
80769
80696
-
Cys
GCA
[ENA]
¡û
>W1710570873
FOVL01000008
Bacteroidota
Salegentibacter flavus [FOVL]
106177
106250
+
Cys
GCA
[ENA]
¡û
>W1710584679
FQVT01000002
Bacteroidota
Salegentibacter echinorum [FQVT]
179978
180051
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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