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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506602 (8 seq.)
>WENV182839816
OKHF01008688
[OKHF] human gut metagenome; human gut
209
282
+
Arg
ACG
[ENA]
¢þ
>C191144076
CP035495
Actinomycetota
Xylanimonas allomyrinae 2JSPR-7 [CP035495]
2679796
2679723
-
Arg
ACG
-
¡û
>W09110392
ABVC01000011
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [ABVC]
100939
100864
-
Arg
ACG
[ENA]
¡û
>C09103315
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
243538
243613
+
Arg
ACG
[Ensembl]
¡û
>SRA1004104
SRR002328.150654
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
57
132
+
Arg
ACG
[SRA]
>C151048679
CP009312
Actinomycetota
Lawsonella clevelandensis X1036 [CP009312]
780924
780851
-
Arg
ACG
-
¡û
>C151094712
CP012390
Actinomycetota
Lawsonella clevelandensis X1698 [CP012390]
817159
817086
-
Arg
ACG
-
¡û
>C10114237
CP001821
Actinomycetota
Xylanimonas cellulosilytica DSM 15894 [CP001821]
3582996
3582921
-
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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