This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506701 (37 seq.)
>W1712041350
NFKZ01000046
Bacillota
Lactobacillus gallinarum [NFKZ]
9444
9372
-
Trp
CCA
[ENA]
¡û
>W1712042262
NFLP01000044
Bacillota
Lactobacillus gallinarum [NFLP]
211
283
+
Trp
CCA
[ENA]
¡û
>C171102958
CP020029
Bacillota
Lactobacillus helveticus D75 [CP020029]
1614488
1614416
-
Trp
CCA
-
¡û
>C171108200
CP020457
Bacillota
Lactobacillus amylolyticus L6 [CP020457]
1152195
1152123
-
Trp
CCA
-
¡û
>WENV181289854
OFHA01002706
[OFHA] mouse gut metagenome; faeces
59
131
+
Trp
CCA
[ENA]
¢þ
>W141228937
BAMG01000052
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens JCM 6985 [BAMG]
92
164
+
Trp
CCA
[ENA]
¡û
>C08006118
CP000517
Bacillota
Lactobacillus helveticus DPC 4571 [CP000517]
458469
458541
+
Trp
CCA
[Ensembl]
¡û
>W141255471
CBUH010000201
Bacillota
Lactobacillus helveticus CIRM-BIA 953 [CBUH]
11313
11241
-
Trp
CCA
[ENA]
¡û
>WENV183150528
OLOP01001732
[OLOP] human gut metagenome; faeces
4214
4286
+
Trp
CCA
[ENA]
¢þ
>WENV183182852
OLPK01001697
[OLPK] human gut metagenome; faeces
3127
3199
+
Trp
CCA
[ENA]
¢þ
>WENV183606223
OODN01001064
[OODN] human gut metagenome; human gut
1777
1849
+
Trp
CCA
[ENA]
¢þ
>C181027689
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
672935
672863
-
Trp
CCA
-
¡û
>W09127669
ACLD01000156
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
509
437
-
Trp
CCA
[ENA]
¡û
>C191073336
CP031018
Bacillota
Lactobacillus helveticus [CP031018]
482343
482415
+
Trp
CCA
-
¡û
>W1910871307
NCWZ01000042
Bacillota
Lactobacillus kefiranofaciens KR [NCWZ]
9326
9254
-
Trp
CCA
[ENA]
¡û
>W1810665972
QJOI01000056
Bacillota
Lactobacillus helveticus FAM13019 [QJOI]
9589
9517
-
Trp
CCA
[ENA]
¡û
>W1810666204
QJOM01000042
Bacillota
Lactobacillus helveticus FAM23285 [QJOM]
9474
9402
-
Trp
CCA
[ENA]
¡û
>W1810666392
QJOP01000039
Bacillota
Lactobacillus helveticus FAM14499 [QJOP]
9363
9291
-
Trp
CCA
[ENA]
¡û
>W1810666456
QJOQ01000050
Bacillota
Lactobacillus helveticus FAM8102 [QJOQ]
9474
9402
-
Trp
CCA
[ENA]
¡û
>W1810666517
QJOR01000048
Bacillota
Lactobacillus helveticus FAM14275 [QJOR]
9474
9402
-
Trp
CCA
[ENA]
¡û
>W1810679610
QKQX01000049
Bacillota
Lactobacillus helveticus FAM21493 [QKQX]
9474
9402
-
Trp
CCA
[ENA]
¡û
>C11111935
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
458136
458208
+
Trp
CCA
[Ensembl]
¡û
>C11112089
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
458387
458459
+
Trp
CCA
[Ensembl]
¡û
>C11112888
CP002429
Bacillota
Lactobacillus helveticus H10 [CP002429]
436332
436404
+
Trp
CCA
[Ensembl]
¡û
>W1511580697
LARO01000034
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
9478
9406
-
Trp
CCA
[ENA]
¡û
>C161041480
CP012381
Bacillota
Lactobacillus helveticus CAUH18 [CP012381]
449885
449957
+
Trp
CCA
-
¡û
>C161047016
CP012890
Bacillota
Lactobacillus gallinarum HFD4 [CP012890]
92904
92832
-
Trp
CCA
[Ensembl]
¡û
>W1610032843
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3102
3174
+
Trp
CCA
[ENA]
¡û
>W1610035592
AZEP01000032
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
482
554
+
Trp
CCA
[ENA]
¡û
>W1610036733
AZFM01000046
Bacillota
Lactobacillus kalixensis DSM 16043 [AZFM]
10161
10089
-
Trp
CCA
[ENA]
¡û
>W1610037755
AZGG01000050
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
123
195
+
Trp
CCA
[ENA]
¡û
>W1610044587
BBAQ01000045
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
2658
2730
+
Trp
CCA
[ENA]
¡û
>W1710030174
AZCM01000042
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
3102
3174
+
Trp
CCA
[ENA]
¡û
>W1710032631
AZEP01000032
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
482
554
+
Trp
CCA
[ENA]
¡û
>W1710033772
AZFM01000046
Bacillota
Lactobacillus kalixensis DSM 16043 [AZFM]
10161
10089
-
Trp
CCA
[ENA]
¡û
>W1710034794
AZGG01000050
Bacillota
Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM [AZGG]
123
195
+
Trp
CCA
[ENA]
¡û
>W1710041685
BBAQ01000045
Bacillota
Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM [BBAQ]
2658
2730
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK