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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50733 (24 seq.)
>W1711229609
LXYP01000006
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
189327
189414
+
Ser
GGA
[ENA]
¡û
>WENV182557783
OJDK01012083
[OJDK] seawater metagenome; Sea water
348
435
+
Ser
GGA
[ENA]
¡û
>WENV182561129
OJDV01006719
[OJDV] seawater metagenome; Sea water
844
757
-
Ser
GGA
[ENA]
¡û
>WENV182585809
OJHI01013466
[OJHI] seawater metagenome; Sea water
402
315
-
Ser
GGA
[ENA]
¡û
>WENV183614996
OOEA01026892
[OOEA] marine metagenome; sea ice
418
331
-
Ser
GGA
[ENA]
¡û
>WENV170668150
LADL02001423
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
22112
22025
-
Ser
GGA
[ENA]
¡û
>C181062154
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
2270030
2269943
-
Ser
GGA
-
¡û
>C181068282
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
1011572
1011485
-
Ser
GGA
-
¡û
>W1911532499
OGVD01000001
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
582307
582220
-
Ser
GGA
[ENA]
¡û
>W1810503377
QBKA01000002
Alphaproteobacteria
Alteripontixanthobacter maritimus HME9302 [QBKA]
1838763
1838676
-
Ser
GGA
[ENA]
¡û
>W2010308781
CABWKY010000007
Alphaproteobacteria
Sphingorhabdus sp. 109 [CABWKY]
593708
593795
+
Ser
GGA
[ENA]
¡û
>W2011165258
OGVD01000001
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
582307
582220
-
Ser
GGA
[ENA]
¡û
>W2011858070
UNRC01000011
Alphaproteobacteria
Sphingorhabdus sp. Alg239-R122 [UNRC]
55717
55630
-
Ser
GGA
[ENA]
¡û
>W2012439676
WTYZ01000001
Alphaproteobacteria
Altererythrobacter aestiaquae KCTC 42006 [WTYZ]
1047282
1047369
+
Ser
GGA
[ENA]
¡û
>W2030067579
WTYX01000002
Alphaproteobacteria
Altererythrobacter aquaemixtae KCTC 52763 [WTYX]
1039398
1039485
+
Ser
GGA
[ENA]
¡û
>W2110372813
JADQTN010000001
Alphaproteobacteria
Pontixanthobacter sp. CEM42 [JADQTN]
1893877
1893790
-
Ser
GGA
[ENA]
¡û
>C211295919
CP071794
Alphaproteobacteria
Parasphingorhabdus sp. JHSY0214 [CP071794]
2322861
2322948
+
Ser
GGA
-
¡û
>C231232393
CP086727
Alphaproteobacteria
Parasphingorhabdus litoris DSM 22379 [CP086727]
69506
69593
+
Ser
GGA
-
¡û
>C241149618
CP051217
Alphaproteobacteria
Parasphingorhabdus halotolerans JK6 [CP051217]
2081301
2081214
-
Ser
GGA
-
¡û
>C161073942
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
75717
75804
+
Ser
GGA
[Ensembl]
¡û
>W1611013479
LXYP01000006
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
189327
189414
+
Ser
GGA
[ENA]
¡û
>WENV077982
AAFY01001521
Fossil microbial community from Whale Fall (Santa Cruz Basin)
1213
1124
-
Ser
GGA
[ENA]
>WENV078372
AAGA01002548
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
114
25
-
Ser
GGA
[ENA]
>W1710593903
FSQW01000001
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
563479
563392
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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