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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508260 (90 seq.)
>W1710865311
LMGO01000005
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
992484
992409
-
Lys
TTT
[ENA]
¡û
>W1710866507
LMHN01000012
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
52805
52880
+
Lys
TTT
[ENA]
¡û
>W1710868089
LMIU01000026
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
70727
70802
+
Lys
TTT
[ENA]
¡û
>W1711077975
LSMI01000068
Betaproteobacteria
Achromobacter xylosoxidans [LSMI]
52715
52790
+
Lys
TTT
[ENA]
¡û
>W1711219922
LXPW01000048
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
52696
52771
+
Lys
TTT
[ENA]
¡û
>W1711658934
MQNQ01001978
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
356
281
-
Lys
TTT
[ENA]
¡û
>W1711658935
MQNQ01001980
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
124
199
+
Lys
TTT
[ENA]
¡û
>W1711658936
MQNQ01001982
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
355
280
-
Lys
TTT
[ENA]
¡û
>W1711658937
MQNQ01001984
Betaproteobacteria
Achromobacter sp. KAs 3-5 [MQNQ]
124
199
+
Lys
TTT
[ENA]
¡û
>W1711723084
MTLG01000011
Betaproteobacteria
Achromobacter xylosoxidans [MTLG]
267653
267578
-
Lys
TTT
[ENA]
¡û
>W1711723225
MTLI01000239
Betaproteobacteria
Achromobacter xylosoxidans [MTLI]
7327
7402
+
Lys
TTT
[ENA]
¡û
>WENV183727386
PJTO01039618
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
248
323
+
Lys
TTT
[ENA]
¡û
>WENV183728010
PJTP01016365
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
566
641
+
Lys
TTT
[ENA]
¡û
>WENV183733454
PJTY01002250
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
4853
4778
-
Lys
TTT
[ENA]
¡û
>WENV183734596
PJTZ01022932
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
293
368
+
Lys
TTT
[ENA]
¡û
>WENV183738236
PJUD01131497
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
289
364
+
Lys
TTT
[ENA]
¡û
>WENV183738664
PJUE01000073
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
96071
95996
-
Lys
TTT
[ENA]
¡û
>WENV183740584
PJUF01003834
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2191
2116
-
Lys
TTT
[ENA]
¡û
>WENV183741343
PJUF01091972
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
83
8
-
Lys
TTT
[ENA]
¡û
>WENV170706297
LNAP01001906
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21497
21422
-
Lys
TTT
[ENA]
¡û
>WENV170784555
MCNE01000667
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2751
2826
+
Lys
TTT
[ENA]
¡û
>WENV170784641
MCNF01000234
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
6444
6519
+
Lys
TTT
[ENA]
¡û
>WENV170965452
MTEU01002615
[MTEU] soil metagenome; naturally attenuated soil
2401
2326
-
Lys
TTT
[ENA]
¡û
>WENV170966663
MTEY01003282
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
831
906
+
Lys
TTT
[ENA]
¡û
>C181078133
CP023270
Betaproteobacteria
Achromobacter spanius MYb73 [CP023270]
864429
864504
+
Lys
TTT
-
¡û
>C181128243
CP026124
Betaproteobacteria
Achromobacter sp. AONIH1 [CP026124]
1933926
1934001
+
Lys
TTT
-
¡û
>W1910890688
NEVL01000001
Betaproteobacteria
Bordetella genomosp. 1 AU17610 [NEVL]
894624
894699
+
Lys
TTT
[ENA]
¡û
>W1910890798
NEVN01000001
Betaproteobacteria
Bordetella genomosp. 5 AU14646 [NEVN]
698753
698828
+
Lys
TTT
[ENA]
¡û
>W1910890923
NEVP01000011
Betaproteobacteria
Bordetella genomosp. 5 AU10456 [NEVP]
593473
593398
-
Lys
TTT
[ENA]
¡û
>W1910891007
NEVR01000001
Betaproteobacteria
Bordetella genomosp. 1 AU9795 [NEVR]
1461383
1461458
+
Lys
TTT
[ENA]
¡û
>W1911641129
PYAL01000004
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
54030
54105
+
Lys
TTT
[ENA]
¡û
>W1911748832
QWFB01000050
Betaproteobacteria
Achromobacter sp. K91 [QWFB]
12331
12406
+
Lys
TTT
[ENA]
¡û
>W1810448798
PZMK01000643
Betaproteobacteria
Achromobacter xylosoxidans BHW-15 [PZMK]
5873
5948
+
Lys
TTT
[ENA]
¡û
>W1810487668
QAYS01000020
Betaproteobacteria
Achromobacter mucicolens KCJK8006 [QAYS]
6501
6576
+
Lys
TTT
[ENA]
¡û
>W1810917553
QVXO01000015
Betaproteobacteria
Achromobacter xylosoxidans GD003A [QVXO]
53231
53306
+
Lys
TTT
[ENA]
¡û
>W2010365994
CADIJM010000016
Betaproteobacteria
Achromobacter animicus LMG 26690 [CADIJM]
42685
42610
-
Lys
TTT
[ENA]
¡û
>W2010366155
CADIJP010000026
Betaproteobacteria
Achromobacter mucicolens LMG 26685 [CADIJP]
6333
6408
+
Lys
TTT
[ENA]
¡û
>W2010366631
CADIJY010000017
Betaproteobacteria
Achromobacter aegrifaciens LMG 26852 [CADIJY]
47060
46985
-
Lys
TTT
[ENA]
¡û
>W2010367449
CADIKO010000003
Betaproteobacteria
Achromobacter aegrifaciens LMG 26854 [CADIKO]
53248
53323
+
Lys
TTT
[ENA]
¡û
>W2010367579
CADIKQ010000019
Betaproteobacteria
Achromobacter mucicolens LMG 26684 [CADIKQ]
59771
59696
-
Lys
TTT
[ENA]
¡û
>W2010367636
CADIKR010000011
Betaproteobacteria
Achromobacter mucicolens LMG 3415 [CADIKR]
42349
42274
-
Lys
TTT
[ENA]
¡û
>W2010367687
CADIKS010000018
Betaproteobacteria
Achromobacter mucicolens LMG 26686 [CADIKS]
43044
42969
-
Lys
TTT
[ENA]
¡û
>W2010367790
CADIKU010000019
Betaproteobacteria
Achromobacter animicus LMG 26691 [CADIKU]
50589
50514
-
Lys
TTT
[ENA]
¡û
>W2010367932
CADIKX010000009
Betaproteobacteria
Achromobacter animicus LMG 26689 [CADIKX]
140763
140688
-
Lys
TTT
[ENA]
¡û
>W2010368091
CADILA010000043
Betaproteobacteria
Achromobacter aegrifaciens LMG 3410 [CADILA]
6346
6421
+
Lys
TTT
[ENA]
¡û
>W2010368419
CADILG010000050
Betaproteobacteria
Achromobacter anxifer LMG 26858 [CADILG]
36954
36879
-
Lys
TTT
[ENA]
¡û
>W2010371320
CAHLAR010000015
Betaproteobacteria
Achromobacter anxifer LMG 26857 [CAHLAR]
71873
71798
-
Lys
TTT
[ENA]
¡û
>W2010599098
JABFNL010000040
Betaproteobacteria
Achromobacter deleyi As-55 [JABFNL]
53134
53209
+
Lys
TTT
[ENA]
¡û
>W2010675963
JACCGI010000001
Betaproteobacteria
Achromobacter sp. B4U2B [JACCGI]
5159279
5159354
+
Lys
TTT
[ENA]
¡û
>W2010955482
NEVL01000001
Betaproteobacteria
Bordetella genomosp. 1 AU17610 [NEVL]
894624
894699
+
Lys
TTT
[ENA]
¡û
>W2010955592
NEVN01000001
Betaproteobacteria
Bordetella genomosp. 5 AU14646 [NEVN]
698753
698828
+
Lys
TTT
[ENA]
¡û
>W2010955717
NEVP01000011
Betaproteobacteria
Bordetella genomosp. 5 AU10456 [NEVP]
593473
593398
-
Lys
TTT
[ENA]
¡û
>W2010955801
NEVR01000001
Betaproteobacteria
Bordetella genomosp. 1 AU9795 [NEVR]
1461383
1461458
+
Lys
TTT
[ENA]
¡û
>W2011231460
PYAL01000004
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
54030
54105
+
Lys
TTT
[ENA]
¡û
>W2011317761
QWFB01000050
Betaproteobacteria
Achromobacter sp. K91 [QWFB]
12331
12406
+
Lys
TTT
[ENA]
¡û
>W2011428877
RHXM01000030
Betaproteobacteria
Achromobacter sp. 270 [RHXM]
35626
35701
+
Lys
TTT
[ENA]
¡û
>W2012018542
VFNE01000001
Betaproteobacteria
Achromobacter sp. SLBN-14 [VFNE]
1581428
1581353
-
Lys
TTT
[ENA]
¡û
>W2110103911
CAJFZV010000025
Betaproteobacteria
Achromobacter insolitus Marseille-P2857 [CAJFZV]
28989
28914
-
Lys
TTT
[ENA]
¡û
>W2110263095
JACTAA010000017
Betaproteobacteria
Achromobacter xylosoxidans YYS002 [JACTAA]
52973
53048
+
Lys
TTT
[ENA]
¡û
>W2110266826
JACUZS010000003
Betaproteobacteria
Achromobacter sp. ACM04 [JACUZS]
53558
53633
+
Lys
TTT
[ENA]
¡û
>W2110267128
JACUZY010000013
Betaproteobacteria
Achromobacter sp. ACM02 [JACUZY]
53227
53302
+
Lys
TTT
[ENA]
¡û
>W2110267245
JACVAD010000003
Betaproteobacteria
Achromobacter sp. ACM03 [JACVAD]
712087
712012
-
Lys
TTT
[ENA]
¡û
>W2110267355
JACVAF010000003
Betaproteobacteria
Achromobacter sp. ACM01 [JACVAF]
1175902
1175827
-
Lys
TTT
[ENA]
¡û
>W2110271815
JACVMM010000021
Betaproteobacteria
Achromobacter xylosoxidans YYS001 [JACVMM]
61590
61515
-
Lys
TTT
[ENA]
¡û
>W2110325504
JADIJM010000024
Betaproteobacteria
Achromobacter sp. SD115 [JADIJM]
52462
52537
+
Lys
TTT
[ENA]
¡û
>W2110573755
JAGTJY010000002
Betaproteobacteria
Achromobacter sp. Marseille-Q0513 [JAGTJY]
136129
136054
-
Lys
TTT
[ENA]
¡û
>W2110580768
JAGXJZ010000027
Betaproteobacteria
Achromobacter sp. GbtcB20 [JAGXJZ]
52364
52439
+
Lys
TTT
[ENA]
¡û
>W2110649614
JAHUWQ010000004
Betaproteobacteria
Achromobacter sp. ACM05 [JAHUWQ]
505433
505358
-
Lys
TTT
[ENA]
¡û
>C201155224
CP045222
Betaproteobacteria
Achromobacter xylosoxidans DN002 [CP045222]
2316543
2316618
+
Lys
TTT
-
¡û
>C211140073
CP061008
Betaproteobacteria
Achromobacter xylosoxidans GD03 [CP061008]
5843473
5843398
-
Lys
TTT
-
¡û
>C211330431
CP074375
Betaproteobacteria
Achromobacter deleyi As-55 [CP074375]
3961641
3961566
-
Lys
TTT
-
¡û
>W1510019076
BBVB01000007
Betaproteobacteria
Bordetella bronchiseptica KU1201 [BBVB]
30001
29926
-
Lys
TTT
[ENA]
¡û
>C231084547
CP059848
Betaproteobacteria
Achromobacter sp. 77 [CP059848]
810227
810302
+
Lys
TTT
-
¡û
>C231273736
CP090381
Betaproteobacteria
Achromobacter deleyi SMAs-55 [CP090381]
5561958
5561883
-
Lys
TTT
-
¡û
>C231572117
CP116006
Betaproteobacteria
Achromobacter mucicolens DMF-4 [CP116006]
52564
52639
+
Lys
TTT
-
¡û
>C241164178
CP053985
Betaproteobacteria
Achromobacter pestifer FDAARGOS_790 [CP053985]
1693306
1693231
-
Lys
TTT
-
¡û
>C241247387
CP123364
Betaproteobacteria
Achromobacter mucicolens Y3 [CP123364]
812690
812765
+
Lys
TTT
-
¡û
>C241302151
CP132598
Betaproteobacteria
Achromobacter aegrifaciens L3024 [CP132598]
6062830
6062755
-
Lys
TTT
-
¡û
>C11101497
CP002287
Betaproteobacteria
Achromobacter xylosoxidans A8 [CP002287]
879971
880046
+
Lys
TTT
[Ensembl]
¡û
>W1610047251
BBDD01000018
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
1866
1941
+
Lys
TTT
[ENA]
¡û
>W1610094016
CYTK01000009
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
186675
186600
-
Lys
TTT
[ENA]
¡û
>W121019641
AGUF01000029
Betaproteobacteria
Achromobacter arsenitoxydans SY8 [AGUF]
39105
39030
-
Lys
TTT
[ENA]
¡û
>W1610727657
LMGO01000005
Betaproteobacteria
Achromobacter sp. Root565 [LMGO]
992484
992409
-
Lys
TTT
[ENA]
¡û
>W1610728853
LMHN01000012
Betaproteobacteria
Achromobacter sp. Root170 [LMHN]
52805
52880
+
Lys
TTT
[ENA]
¡û
>W1610730435
LMIU01000026
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
70727
70802
+
Lys
TTT
[ENA]
¡û
>W1610916991
LSMI01000068
Betaproteobacteria
Achromobacter xylosoxidans [LSMI]
52715
52790
+
Lys
TTT
[ENA]
¡û
>W1611004394
LXPW01000048
Betaproteobacteria
Achromobacter xylosoxidans [LXPW]
52696
52771
+
Lys
TTT
[ENA]
¡û
>W1710043856
BBDD01000018
Betaproteobacteria
Achromobacter sp. JCM 18799 [BBDD]
1866
1941
+
Lys
TTT
[ENA]
¡û
>W1710097059
CYTK01000009
Betaproteobacteria
Achromobacter aegrifaciens 2789STDY5608625 [CYTK]
186675
186600
-
Lys
TTT
[ENA]
¡û
>W1710541646
FNYM01000011
Betaproteobacteria
Achromobacter sp. NFACC18-2 [FNYM]
178739
178664
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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