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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508992 (55 seq.)
>WENV180042781
LQAG01000697
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
457
529
+
Thr
TGT
[ENA]
¡û
>WENV180187163
OAWV01027261
[OAWV] human gut metagenome; faeces
215
288
+
Thr
TGT
[ENA]
¡û
>WENV180401232
OBRJ01016608
[OBRJ] human gut metagenome; ENVO:feces
168
241
+
Thr
TGT
[ENA]
¡û
>WENV183745589
POVV01000116
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
391
463
+
Thr
TGT
[ENA]
¡û
>WENV183747367
PPCM01001177
[PPCM] marine sediment metagenome; marine sediment
3765
3837
+
Thr
TGT
[ENA]
¡û
>WENV170635184
JDSF01000199
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
287
359
+
Thr
TGT
[ENA]
¡û
>WENV170635196
JDSF01000250
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
70
142
+
Thr
TGT
[ENA]
¡û
>WENV170646503
JQGR01016408
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
119
191
+
Thr
TGT
[ENA]
¡û
>WENV170646515
JQGR01018354
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
127
55
-
Thr
TGT
[ENA]
¡û
>WENV170785335
MDSP01020332
[MDSP] gut metagenome; Stomach gut content
1049
1121
+
Thr
TGT
[ENA]
¡û
>WENV170785800
MDSQ01000036
[MDSQ] gut metagenome; Hindgut content
14685
14613
-
Thr
TGT
[ENA]
¡û
>W1911116966
NOKA02000072
Bacillota
Lachnotalea glycerini CCRI-19302 [NOKA]
268
340
+
Thr
TGT
[ENA]
¡û
>W1911116980
NOKA02000176
Bacillota
Lachnotalea glycerini CCRI-19302 [NOKA]
769
697
-
Thr
TGT
[ENA]
¡û
>W1911491571
OAOG01000052
Bacillota
Anaerocolumna aminovalerica [OAOG]
304
376
+
Thr
TGT
[ENA]
¡û
>W1911491591
OAOG01000094
Bacillota
Anaerocolumna aminovalerica [OAOG]
721
649
-
Thr
TGT
[ENA]
¡û
>W1810250670
PQDH01000011
Bacillota
Vallitalea okinawensis S15 [PQDH]
370
445
+
Thr
TGT
[ENA]
¡û
>W1810250694
PQDH01000020
Bacillota
Vallitalea okinawensis S15 [PQDH]
318
390
+
Thr
TGT
[ENA]
¡û
>W1810250695
PQDH01000021
Bacillota
Vallitalea okinawensis S15 [PQDH]
119
191
+
Thr
TGT
[ENA]
¡û
>W1810250709
PQDH01000029
Bacillota
Vallitalea okinawensis S15 [PQDH]
23202
23130
-
Thr
TGT
[ENA]
¡û
>W1810628751
QICS01000019
Bacillota
Lachnotalea glycerini DSM 28816 [QICS]
57959
57887
-
Thr
TGT
[ENA]
¡û
>W1810628766
QICS01000021
Bacillota
Lachnotalea glycerini DSM 28816 [QICS]
380
452
+
Thr
TGT
[ENA]
¡û
>W1810700906
QMDO01000001
Bacillota
Vallitalea guaymasensis L81 [QMDO]
2530871
2530943
+
Thr
TGT
[ENA]
¡û
>W1810700931
QMDO01000001
Bacillota
Vallitalea guaymasensis L81 [QMDO]
3510189
3510261
+
Thr
TGT
[ENA]
¡û
>W2010537720
JAAQRO010000006
Bacillota
Anaerosporobacter sp. KCTC 15857 [JAAQRO]
116017
115945
-
Thr
TGT
[ENA]
¡û
>W2010537774
JAAQRO010000046
Bacillota
Anaerosporobacter sp. KCTC 15857 [JAAQRO]
435
507
+
Thr
TGT
[ENA]
¡û
>W2011010520
NOKA02000072
Bacillota
Lachnotalea glycerini CCRI-19302 [NOKA]
268
340
+
Thr
TGT
[ENA]
¡û
>W2011010534
NOKA02000176
Bacillota
Lachnotalea glycerini CCRI-19302 [NOKA]
769
697
-
Thr
TGT
[ENA]
¡û
>W2011152522
OAOG01000052
Bacillota
Anaerocolumna aminovalerica [OAOG]
304
376
+
Thr
TGT
[ENA]
¡û
>W2011152542
OAOG01000094
Bacillota
Anaerocolumna aminovalerica [OAOG]
721
649
-
Thr
TGT
[ENA]
¡û
>W2011443098
RJVG01000004
Bacillota
Mobilisporobacter senegalensis DSM 26537 [RJVG]
370613
370541
-
Thr
TGT
[ENA]
¡û
>W2011443137
RJVG01000021
Bacillota
Mobilisporobacter senegalensis DSM 26537 [RJVG]
14721
14649
-
Thr
TGT
[ENA]
¡û
>W2011634758
SMGQ01000001
Bacillota
Natranaerovirga hydrolytica DSM 24176 [SMGQ]
168
240
+
Thr
TGT
[ENA]
¡û
>W2011634779
SMGQ01000015
Bacillota
Natranaerovirga hydrolytica DSM 24176 [SMGQ]
269
341
+
Thr
TGT
[ENA]
¡û
>W2012226485
WAGX01000006
Bacillota
Candidatus Galacturonibacter soehngenii [WAGX]
72987
72915
-
Thr
TGT
[ENA]
¡û
>W2110620269
JAHLON010000079
Bacillota
Anaerocolumna aminovalerica N98 [JAHLON]
20057
19985
-
Thr
TGT
[ENA]
¡û
>W2110620280
JAHLON010000103
Bacillota
Anaerocolumna aminovalerica N98 [JAHLON]
14196
14124
-
Thr
TGT
[ENA]
¡û
>C201000292
AP018794
Bacillota
Lachnospiraceae bacterium KM106-2 [AP018794]
3512431
3512503
+
Thr
TGT
-
¡û
>C201000328
AP018794
Bacillota
Lachnospiraceae bacterium KM106-2 [AP018794]
3234669
3234597
-
Thr
TGT
-
¡û
>C211015382
AP024169
Bacillota
Lachnospiraceae bacterium TB5 [AP024169]
16613
16685
+
Thr
TGT
-
¡û
>C211015402
AP024169
Bacillota
Lachnospiraceae bacterium TB5 [AP024169]
1139349
1139421
+
Thr
TGT
-
¡û
>C211015426
AP024169
Bacillota
Lachnospiraceae bacterium TB5 [AP024169]
5045042
5044970
-
Thr
TGT
-
¡û
>C211116941
CP058561
Bacillota
Vallitalea guaymasensis Ra1766G1 [CP058561]
2468507
2468579
+
Thr
TGT
-
¡û
>C211116966
CP058561
Bacillota
Vallitalea guaymasensis Ra1766G1 [CP058561]
3597405
3597477
+
Thr
TGT
-
¡û
>C211117344
CP058649
Bacillota
Vallitalea pronyensis FatNI3 [CP058649]
5410278
5410206
-
Thr
TGT
-
¡û
>C211117355
CP058649
Bacillota
Vallitalea pronyensis FatNI3 [CP058649]
382866
382794
-
Thr
TGT
-
¡û
>W2310011351
BNUF01000127
Bacillota
Clostridia bacterium MS499-75 [BNUF]
3134
3062
-
Thr
TGT
[ENA]
¡û
>W2310019043
BRLB01000012
Bacillota
Vallitalea longa SH18-1 [BRLB]
179
252
+
Thr
TGT
[ENA]
¡û
>W2310019069
BRLB01000029
Bacillota
Vallitalea longa SH18-1 [BRLB]
519
591
+
Thr
TGT
[ENA]
¡û
>W1710504736
FMKA01000035
Bacillota
Anaerobium acetethylicum [FMKA]
483
555
+
Thr
TGT
[ENA]
¡û
>W1710504744
FMKA01000036
Bacillota
Anaerobium acetethylicum [FMKA]
643
718
+
Thr
TGT
[ENA]
¡û
>W1710571712
FOWD01000018
Bacillota
Anaerocolumna aminovalerica [FOWD]
87294
87222
-
Thr
TGT
[ENA]
¡û
>W1710571740
FOWD01000055
Bacillota
Anaerocolumna aminovalerica [FOWD]
660
732
+
Thr
TGT
[ENA]
¡û
>W1710575221
FOYZ01000007
Bacillota
Anaeromicropila populeti [FOYZ]
219030
218958
-
Thr
TGT
[ENA]
¡û
>W1710575240
FOYZ01000015
Bacillota
Anaeromicropila populeti [FOYZ]
612
684
+
Thr
TGT
[ENA]
¡û
>W1710592589
FRCP01000008
Bacillota
Anaerosporobacter mobilis DSM 15930 [FRCP]
345813
345741
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK