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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.509305 (114 seq.)
>W1712036156
NFHH01000076
Bacillota
Blautia sp. An81 [NFHH]
468
543
+
Ala
TGC
[ENA]
¡û
>W1712036158
NFHH01000077
Bacillota
Blautia sp. An81 [NFHH]
243
168
-
Ala
TGC
[ENA]
¡û
>WENV180123498
OASW01008858
[OASW] human gut metagenome; faeces
61
134
+
Ala
TGC
[ENA]
¡û
>WENV180124666
OASX01062912
[OASX] human gut metagenome; faeces
73
1
-
Ala
TGC
[ENA]
¡û
>WENV180138688
OATQ01002118
[OATQ] human gut metagenome; faeces
414
487
+
Ala
TGC
[ENA]
¡û
>WENV180140352
OATT01060936
[OATT] human gut metagenome; faeces
73
1
-
Ala
TGC
[ENA]
¡û
>WENV180149274
OAUK01045107
[OAUK] human gut metagenome; faeces
115
188
+
Ala
TGC
[ENA]
¡û
>WENV180162592
OAVG01035962
[OAVG] human gut metagenome; faeces
73
1
-
Ala
TGC
[ENA]
¡û
>WENV180306863
OBJP01017347
[OBJP] human gut metagenome; human gut
338
411
+
Ala
TGC
[ENA]
¡û
>WENV180308002
OBJQ01013335
[OBJQ] human gut metagenome; human gut
174
247
+
Ala
TGC
[ENA]
¡û
>WENV180454395
OBXM01036338
[OBXM] human gut metagenome; faeces
169
241
+
Ala
TGC
[ENA]
¡û
>WENV180458298
OBXV01009420
[OBXV] human gut metagenome; faeces
226
299
+
Ala
TGC
[ENA]
¡û
>WENV180678121
OCVV011878416
[OCVV] gut metagenome; gut
42
114
+
Ala
TGC
[ENA]
¡û
>WENV180678123
OCVV011878416
[OCVV] gut metagenome; gut
42
114
+
Ala
TGC
[ENA]
¡û
>WENV181184034
OEJW01037777
[OEJW] human metagenome; G_DNA_Stool
377
449
+
Ala
TGC
[ENA]
¡û
>WENV181199286
OERG01011042
[OERG] metagenome; Caecal content
402
329
-
Ala
TGC
[ENA]
¡û
>WENV181200686
OERL01002523
[OERL] metagenome; Caecal content
475
548
+
Ala
TGC
[ENA]
¡û
>WENV181917341
OGYG01008956
[OGYG] human gut metagenome; faeces
1903
1831
-
Ala
TGC
[ENA]
¡û
>WENV182622079
OJKJ01006107
[OJKJ] metagenome; faeces
561
634
+
Ala
TGC
[ENA]
¡û
>WENV182622142
OJKJ01007904
[OJKJ] metagenome; faeces
1393
1321
-
Ala
TGC
[ENA]
¡û
>WENV183086683
OLJF01072645
[OLJF] metagenome; faeces
34
107
+
Ala
TGC
[ENA]
¡û
>WENV183101259
OLNG01017336
[OLNG] human gut metagenome; faeces
91
163
+
Ala
TGC
[ENA]
¡û
>WENV183135123
OLOD01024080
[OLOD] human gut metagenome; faeces
87
160
+
Ala
TGC
[ENA]
¡û
>WENV183168366
OLOZ01012985
[OLOZ] human gut metagenome; faeces
1919
1846
-
Ala
TGC
[ENA]
¡û
>WENV183290876
OLSH01011088
[OLSH] human gut metagenome; faeces
551
478
-
Ala
TGC
[ENA]
¡û
>WENV183527959
ONZW01014737
[ONZW] human gut metagenome; human gut
341
414
+
Ala
TGC
[ENA]
¡û
>WENV183557914
OOBP01024177
[OOBP] human gut metagenome; human gut
102
175
+
Ala
TGC
[ENA]
¡û
>WENV183612091
OODT01005861
[OODT] human gut metagenome; human gut
767
840
+
Ala
TGC
[ENA]
¡û
>WENV170005602
AMCI01008305
[AMCI] gut metagenome; fecal sample from gut
99
26
-
Ala
TGC
[ENA]
¡û
>WENV170638624
JFBN01500787
[JFBN] chicken gut metagenome; ceca of Broiler chicken
94
21
-
Ala
TGC
[ENA]
¡û
>C181064423
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
759691
759764
+
Ala
TGC
-
¡û
>C181064445
CP022413
Bacillota
Blautia hansenii DSM 20583 [CP022413]
2786270
2786197
-
Ala
TGC
-
¡û
>C191147555
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
6000737
6000665
-
Ala
TGC
-
¡û
>C191147577
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
753736
753662
-
Ala
TGC
-
¡û
>W09113667
ABYU02000028
Bacillota
Blautia hansenii DSM 20583 [ABYU]
353
426
+
Ala
TGC
[ENA]
¡û
>W1911180286
NQOF01000026
Bacillota
Blautia sp. KB1 [NQOF]
336
264
-
Ala
TGC
[ENA]
¡û
>W1911532833
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
2825646
2825719
+
Ala
TGC
[ENA]
¡û
>W1911532879
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
1003985
1003912
-
Ala
TGC
[ENA]
¡û
>W1911532882
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
862351
862278
-
Ala
TGC
[ENA]
¡û
>W1810252158
PQGC01000691
Bacillota
Lactonifactor longoviformis DSM 17459 [PQGC]
311
383
+
Ala
TGC
[ENA]
¡û
>W1810862834
QTUU01000009
Bacillota
Firmicutes bacterium AM10-47 [QTUU]
149
76
-
Ala
TGC
[ENA]
¡û
>W1810883192
QULP01000035
Bacillota
Firmicutes bacterium OM04-13BH [QULP]
377
450
+
Ala
TGC
[ENA]
¡û
>W2010210596
CABHIG010000057
Bacillota
Erysipelatoclostridium ramosum 4928STDY7387865 [CABHIG]
568
640
+
Ala
TGC
[ENA]
¡û
>W2010210597
CABHIG010000071
Bacillota
Erysipelatoclostridium ramosum 4928STDY7387865 [CABHIG]
132
206
+
Ala
TGC
[ENA]
¡û
>W2010253666
CABJAF020000050
Bacillota
Blautia producta [CABJAF]
271
343
+
Ala
TGC
[ENA]
¡û
>W2010253667
CABJAF020000052
Bacillota
Blautia producta [CABJAF]
123
196
+
Ala
TGC
[ENA]
¡û
>W2010253971
CABJAN020000010
Bacillota
Firmicutes bacterium [CABJAN]
585
658
+
Ala
TGC
[ENA]
¡û
>W2010254016
CABJAN020000049
Bacillota
Firmicutes bacterium [CABJAN]
382
455
+
Ala
TGC
[ENA]
¡û
>W2010279004
CABMFJ010000035
Bacillota
Firmicutes bacterium [CABMFJ]
377
450
+
Ala
TGC
[ENA]
¡û
>W2010285110
CABMKU010000026
Bacillota
Blautia marasmi [CABMKU]
336
264
-
Ala
TGC
[ENA]
¡û
>W2010287366
CABMML010000691
Bacillota
Lactonifactor longoviformis [CABMML]
311
383
+
Ala
TGC
[ENA]
¡û
>W2010485694
JAAITA010000072
Bacillota
Blautia hansenii MSK.15.26 [JAAITA]
169
96
-
Ala
TGC
[ENA]
¡û
>W2011036218
NQOF01000026
Bacillota
Blautia sp. KB1 [NQOF]
336
264
-
Ala
TGC
[ENA]
¡û
>W2011165520
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
2825646
2825719
+
Ala
TGC
[ENA]
¡û
>W2011165566
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
1003985
1003912
-
Ala
TGC
[ENA]
¡û
>W2011165569
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
862351
862278
-
Ala
TGC
[ENA]
¡û
>W2011489967
RSDX01000001
Bacillota
Herbinix hemicellulosilytica LL1355 [RSDX]
2936570
2936497
-
Ala
TGC
[ENA]
¡û
>W2011489972
RSDX01000001
Bacillota
Herbinix hemicellulosilytica LL1355 [RSDX]
579607
579534
-
Ala
TGC
[ENA]
¡û
>W2011489987
RSDX01000001
Bacillota
Herbinix hemicellulosilytica LL1355 [RSDX]
189420
189347
-
Ala
TGC
[ENA]
¡û
>W2011818654
UFVT01000001
Bacillota
Blautia coccoides NCTC11035 [UFVT]
4120320
4120394
+
Ala
TGC
[ENA]
¡û
>W2011818692
UFVT01000001
Bacillota
Blautia coccoides NCTC11035 [UFVT]
2208417
2208345
-
Ala
TGC
[ENA]
¡û
>W2012368076
WKYT01000010
Bacillota
Lactonifactor sp. BIOML-A7 [WKYT]
119220
119293
+
Ala
TGC
[ENA]
¡û
>W2012368189
WKYU01000080
Bacillota
Lactonifactor sp. BIOML-A6 [WKYU]
1014
1087
+
Ala
TGC
[ENA]
¡û
>W2012368193
WKYV01000001
Bacillota
Lactonifactor sp. BIOML-A5 [WKYV]
195
122
-
Ala
TGC
[ENA]
¡û
>W2012368268
WKYW01000011
Bacillota
Lactonifactor sp. BIOML-A4 [WKYW]
204
131
-
Ala
TGC
[ENA]
¡û
>W2012368378
WKYY01000001
Bacillota
Lactonifactor sp. BIOML-A2 [WKYY]
204
131
-
Ala
TGC
[ENA]
¡û
>W2110075561
CACRSY010000011
Bacillota
Blautia hansenii [CACRSY]
371
444
+
Ala
TGC
[ENA]
¡û
>W2110123115
CAJTAN010000029
Bacillota
Blautia coccoides [CAJTAN]
388
461
+
Ala
TGC
[ENA]
¡û
>W2110123118
CAJTAN010000034
Bacillota
Blautia coccoides [CAJTAN]
222
150
-
Ala
TGC
[ENA]
¡û
>W2110126796
CAJTFD010000018
Bacillota
Clostridia bacterium [CAJTFD]
54631
54706
+
Ala
TGC
[ENA]
¡û
>W2110126800
CAJTFD010000072
Bacillota
Clostridia bacterium [CAJTFD]
821
896
+
Ala
TGC
[ENA]
¡û
>W2110129005
CAJTHK010000048
Bacillota
Blautia coccoides [CAJTHK]
383
310
-
Ala
TGC
[ENA]
¡û
>W2110129007
CAJTHK010000049
Bacillota
Blautia coccoides [CAJTHK]
441
513
+
Ala
TGC
[ENA]
¡û
>W2110245006
JACOOU010000041
Bacillota
Blautia sp. NSJ-34 [JACOOU]
302
230
-
Ala
TGC
[ENA]
¡û
>C201308500
LR698970
Bacillota
Lachnospiraceae bacterium [LR698970, LR699005]
760382
760455
+
Ala
TGC
-
¡û
>C201308522
LR698970
Bacillota
Lachnospiraceae bacterium [LR698970, LR699005]
2786961
2786888
-
Ala
TGC
-
¡û
>C211050566
CP039126
Bacillota
Blautia producta DSM 2950 [CP039126]
1294868
1294940
+
Ala
TGC
-
¡û
>C211050593
CP039126
Bacillota
Blautia producta DSM 2950 [CP039126]
5487675
5487601
-
Ala
TGC
-
¡û
>C211174857
CP063304
Bacillota
Blautia sp. LZLJ-3 [CP063304]
11533
11606
+
Ala
TGC
-
¡û
>C211174906
CP063304
Bacillota
Blautia sp. LZLJ-3 [CP063304]
1944052
1943979
-
Ala
TGC
-
¡û
>W2110709552
JAIXOC010000001
Bacillota
Blautia sp. RD014232 [JAIXOC]
35415
35487
+
Ala
TGC
[ENA]
¡û
>W2110709595
JAIXOC010000002
Bacillota
Blautia sp. RD014232 [JAIXOC]
1271618
1271690
+
Ala
TGC
[ENA]
¡û
>W2110720924
JAJBOG010000072
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
169
96
-
Ala
TGC
[ENA]
¡û
>W2110722417
JAJBPW010000062
Bacillota
Lactonifactor longoviformis MSK.1.4 [JAJBPW]
183
110
-
Ala
TGC
[ENA]
¡û
>W2110722474
JAJBPX010000059
Bacillota
Lactonifactor longoviformis MSK.1.28 [JAJBPX]
183
110
-
Ala
TGC
[ENA]
¡û
>W2110724166
JAJBSJ010000049
Bacillota
Blautia producta UOC.14.97 [JAJBSJ]
319
391
+
Ala
TGC
[ENA]
¡û
>C211345709
CP076458
Bacillota
Lachnospiraceae bacterium JN500902 [CP076458]
12341
12415
+
Ala
TGC
-
¡û
>C211345756
CP076458
Bacillota
Lachnospiraceae bacterium JN500902 [CP076458]
1958274
1958200
-
Ala
TGC
-
¡û
>W2110734385
JAJCRV010000042
Bacillota
Blautia marasmi SL.2.02 [JAJCRV]
270
343
+
Ala
TGC
[ENA]
¡û
>W2110734388
JAJCRV010000046
Bacillota
Blautia marasmi SL.2.02 [JAJCRV]
285
357
+
Ala
TGC
[ENA]
¡û
>C211423241
LR994468
Bacillota
Blautia argi [LR994468]
445843
445916
+
Ala
TGC
-
¡û
>C211423264
LR994468
Bacillota
Blautia argi [LR994468]
2356125
2356052
-
Ala
TGC
-
¡û
>C231187927
CP084061
Bacillota
Blautia sp. NBRC 113351 [CP084061]
5472800
5472873
+
Ala
TGC
-
¡û
>C231187949
CP084061
Bacillota
Blautia sp. NBRC 113351 [CP084061]
3329558
3329485
-
Ala
TGC
-
¡û
>C231347128
CP094680
Bacillota
Clostridia bacterium UC5.1-1D4 VE303-05 [CP094680]
5564484
5564556
+
Ala
TGC
-
¡û
>C231347146
CP094680
Bacillota
Clostridia bacterium UC5.1-1D4 VE303-05 [CP094680]
3571536
3571463
-
Ala
TGC
-
¡û
>C231449375
CP102264
Bacillota
Blautia hansenii DSM 20583 [CP102264]
759692
759765
+
Ala
TGC
-
¡û
>C231449397
CP102264
Bacillota
Blautia hansenii DSM 20583 [CP102264]
2785912
2785839
-
Ala
TGC
-
¡û
>C241129801
CP048626
Bacillota
Blautia producta ATCC 27340 = DSM 2950 JCM 1471 [CP048626]
3861908
3861982
+
Ala
TGC
-
¡û
>C241129821
CP048626
Bacillota
Blautia producta ATCC 27340 = DSM 2950 JCM 1471 [CP048626]
5225902
5225974
+
Ala
TGC
-
¡û
>C241154971
CP053228
Bacillota
Blautia pseudococcoides SCSK [CP053228]
4832161
4832234
+
Ala
TGC
-
¡û
>C241154998
CP053228
Bacillota
Blautia pseudococcoides SCSK [CP053228]
2901875
2901803
-
Ala
TGC
-
¡û
>C241327004
CP136422
Bacillota
Blautia coccoides DSM 935 [CP136422]
684152
684226
+
Ala
TGC
-
¡û
>C241327043
CP136422
Bacillota
Blautia coccoides DSM 935 [CP136422]
4870135
4870063
-
Ala
TGC
-
¡û
>W2130042217
JAJBSJ010000050
Bacillota
Blautia producta UOC.14.97 [JAJBSJ]
363
289
-
Ala
TGC
[ENA]
¡û
>W2130042502
JAJCLI010000083
Bacillota
Blautia producta DFI.1.120 [JAJCLI]
77
3
-
Ala
TGC
[ENA]
¡û
>W11105876
ACTV01000014
Bacillota
Lachnospiraceae bacterium 6_1_63FAA [ACTV]
101
28
-
Ala
TGC
[ENA]
¡û
>W1511577950
LARA01000079
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
482
409
-
Ala
TGC
[ENA]
¡û
>W1511579311
LARB01000594
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
393
466
+
Ala
TGC
[ENA]
¡û
>W1511579929
LARH01000086
Bacillota
Carnobacterium sp. N15.MGS-207 [LARH]
524
597
+
Ala
TGC
[ENA]
¡û
>W1511580071
LARI01000075
Bacillota
Carnobacterium sp. N15.MGS-251 [LARI]
937
1010
+
Ala
TGC
[ENA]
¡û
>W1511580190
LARI01000168
Bacillota
Carnobacterium sp. N15.MGS-251 [LARI]
342
269
-
Ala
TGC
[ENA]
¡û
>C161087314
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
198393
198465
+
Ala
TGC
[Ensembl]
¡û
>C161087348
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
3598488
3598415
-
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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