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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50982 (58 seq.)
>W1710816624
LKLF01000026
Bacillota
Lactococcus lactis subsp. lactis [LKLF]
60619
60535
-
Leu
TAA
[ENA]
¡û
>W1710816671
LKLG01000023
Bacillota
Lactococcus lactis subsp. lactis [LKLG]
56420
56504
+
Leu
TAA
[ENA]
¡û
>W1710816836
LKLJ01000020
Bacillota
Lactococcus lactis subsp. lactis [LKLJ]
25741
25657
-
Leu
TAA
[ENA]
¡û
>W1710817038
LKLN01000030
Bacillota
Lactococcus lactis subsp. lactis [LKLN]
94573
94489
-
Leu
TAA
[ENA]
¡û
>W1710817143
LKLP01000037
Bacillota
Lactococcus lactis subsp. lactis [LKLP]
92
8
-
Leu
TAA
[ENA]
¡û
>W1710817165
LKLP01000064
Bacillota
Lactococcus lactis subsp. lactis [LKLP]
8
92
+
Leu
TAA
[ENA]
¡û
>W1710817184
LKLP01000129
Bacillota
Lactococcus lactis subsp. lactis [LKLP]
12557
12473
-
Leu
TAA
[ENA]
¡û
>W131187976
ASAE01000372
Bacillota
Lactococcus lactis subsp. lactis NCDO 2118 [ASAE]
918
832
-
Leu
TAA
[ENA]
¡û
>W1712017193
NEQN01000013
Bacillota
Lactococcus lactis [NEQN]
932
1018
+
Leu
TAA
[ENA]
¡û
>WENV180455749
OBXO01033866
[OBXO] human gut metagenome; faeces
58
142
+
Leu
TAA
[ENA]
¡û
>WENV181533644
OGHR01008476
[OGHR] metagenome; Human gut stool
807
723
-
Leu
TAA
[ENA]
¡û
>WENV183132049
OLOB01000326
[OLOB] human gut metagenome; faeces
24500
24586
+
Leu
TAA
[ENA]
¡û
>WENV170001528
AGFS01075302
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
642
558
-
Leu
TAA
[ENA]
¡û
>W141734472
JNLP01000001
Bacillota
Lactococcus lactis subsp. lactis [JNLP]
1293721
1293637
-
Leu
TAA
[ENA]
¡û
>W1810270769
PREW01000002
Bacillota
Lactococcus lactis PAZ [PREW]
477042
477126
+
Leu
TAA
[ENA]
¡û
>W1810796469
QRLU01000001
Bacillota
Lactococcus lactis AM11-49 [QRLU]
41148
41234
+
Leu
TAA
[ENA]
¡û
>C151042525
CP009054
Bacillota
Lactococcus lactis subsp. lactis NCDO 2118 [CP009054]
1543443
1543357
-
Leu
TAA
[Ensembl]
¡û
>C151052184
CP009472
Bacillota
Lactococcus lactis AI06 [CP009472]
1095571
1095657
+
Leu
TAA
[Ensembl]
¡û
>W2010145574
BLYG01000001
Bacillota
Lactococcus lactis 11/19B-1 [BLYG]
1626818
1626734
-
Leu
TAA
[ENA]
¡û
>W2010259000
CABJEC020000001
Bacillota
Lactococcus lactis [CABJEC]
41148
41234
+
Leu
TAA
[ENA]
¡û
>W2011688594
SSBR01000011
Bacillota
Lactococcus lactis gh1 [SSBR]
38762
38848
+
Leu
TAA
[ENA]
¡û
>W2012064289
VJWV01000010
Bacillota
Lactococcus lactis MRS45.2 [VJWV]
58116
58202
+
Leu
TAA
[ENA]
¡û
>W2012206216
VXKC01000021
Bacillota
Lactococcus lactis subsp. hordniae CCUG 32210T [VXKC]
36
120
+
Leu
TAA
[ENA]
¡û
>W2012206218
VXKC01000022
Bacillota
Lactococcus lactis subsp. hordniae CCUG 32210T [VXKC]
12614
12530
-
Leu
TAA
[ENA]
¡û
>W2012206243
VXKC01000070
Bacillota
Lactococcus lactis subsp. hordniae CCUG 32210T [VXKC]
486
570
+
Leu
TAA
[ENA]
¡û
>W2012356859
WKFC01000001
Bacillota
Lactococcus lactis D53 [WKFC]
395085
395169
+
Leu
TAA
[ENA]
¡û
>W2110275369
JACVUQ010000003
Bacillota
Lactococcus sp. S64 [JACVUQ]
171175
171091
-
Leu
TAA
[ENA]
¡û
>W2110300356
JADBCE010000038
Bacillota
Lactococcus lactis LB6 [JADBCE]
11790
11874
+
Leu
TAA
[ENA]
¡û
>W2110708143
JAIWQZ010000003
Bacillota
Lactococcus sp. SK2-659 [JAIWQZ]
109930
110016
+
Leu
TAA
[ENA]
¡û
>C231019527
AP025701
Bacillota
Lactococcus lactis ID-5 [AP025701]
1726527
1726443
-
Leu
TAA
-
¡û
>C231081908
CP059048
Bacillota
Lactococcus lactis LAC460 [CP059048]
1655562
1655478
-
Leu
TAA
-
¡û
>C231406935
CP098790
Bacillota
Lactococcus lactis WiKim0124 [CP098790]
1718950
1718866
-
Leu
TAA
-
¡û
>C231641232
CP121454
Bacillota
Lactococcus lactis SampleD1_2 [CP121454]
906938
907022
+
Leu
TAA
-
¡û
>C231641237
CP121454
Bacillota
Lactococcus lactis SampleD1_2 [CP121454]
2206749
2206665
-
Leu
TAA
-
¡û
>C241065500
CP042408
Bacillota
Lactococcus lactis CBA3619 [CP042408]
2157787
2157871
+
Leu
TAA
-
¡û
>C241290228
CP129879
Bacillota
Lactococcus lactis subsp. lactis CAB701 [CP129879]
1902905
1902821
-
Leu
TAA
-
¡û
>C241313259
CP133787
Bacillota
Lactococcus cremoris KCKM 0438 [CP133787]
1475218
1475304
+
Leu
TAA
-
¡û
>C10108564
CP001834
Bacillota
Lactococcus lactis subsp. lactis KF147 [CP001834]
1534569
1534483
-
Leu
TAA
[Ensembl]
¡û
>WENV11101600
AGFS01075302
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
642
558
-
Leu
TAA
[ENA]
¡û
>W1511344664
JRFX01000022
Bacillota
Lactococcus lactis Bpl1 [JRFX]
189
275
+
Leu
TAA
[ENA]
¡û
>W1610044502
BBAP01000002
Bacillota
Lactococcus lactis subsp. lactis JCM 7638 [BBAP]
188389
188303
-
Leu
TAA
[ENA]
¡û
>W1610072917
BCVL01000021
Bacillota
Lactococcus lactis subsp. hordniae NBRC 100931 [BCVL]
41758
41674
-
Leu
TAA
[ENA]
¡û
>W1610072919
BCVL01000022
Bacillota
Lactococcus lactis subsp. hordniae NBRC 100931 [BCVL]
27697
27781
+
Leu
TAA
[ENA]
¡û
>C131000269
AP012281
Bacillota
Lactococcus lactis subsp. lactis IO-1 [AP012281]
1960523
1960437
-
Leu
TAA
[Ensembl]
¡û
>W1610635182
LITB01000018
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
115920
115834
-
Leu
TAA
[ENA]
¡û
>W1610638838
LIYF01000004
Bacillota
Lactococcus cremoris subsp. cremoris [LIYF]
3182
3098
-
Leu
TAA
[ENA]
¡û
>W1610680612
LKLF01000026
Bacillota
Lactococcus lactis subsp. lactis [LKLF]
60619
60535
-
Leu
TAA
[ENA]
¡û
>W1610680659
LKLG01000023
Bacillota
Lactococcus lactis subsp. lactis [LKLG]
56420
56504
+
Leu
TAA
[ENA]
¡û
>W1610680824
LKLJ01000020
Bacillota
Lactococcus lactis subsp. lactis [LKLJ]
25741
25657
-
Leu
TAA
[ENA]
¡û
>W1610681026
LKLN01000030
Bacillota
Lactococcus lactis subsp. lactis [LKLN]
94573
94489
-
Leu
TAA
[ENA]
¡û
>W1610681131
LKLP01000037
Bacillota
Lactococcus lactis subsp. lactis [LKLP]
92
8
-
Leu
TAA
[ENA]
¡û
>W1610681153
LKLP01000064
Bacillota
Lactococcus lactis subsp. lactis [LKLP]
8
92
+
Leu
TAA
[ENA]
¡û
>W1610681172
LKLP01000129
Bacillota
Lactococcus lactis subsp. lactis [LKLP]
12557
12473
-
Leu
TAA
[ENA]
¡û
>W1710041600
BBAP01000002
Bacillota
Lactococcus lactis subsp. lactis JCM 7638 [BBAP]
188389
188303
-
Leu
TAA
[ENA]
¡û
>W1710070035
BCVL01000021
Bacillota
Lactococcus lactis subsp. hordniae NBRC 100931 [BCVL]
41758
41674
-
Leu
TAA
[ENA]
¡û
>W1710070037
BCVL01000022
Bacillota
Lactococcus lactis subsp. hordniae NBRC 100931 [BCVL]
27697
27781
+
Leu
TAA
[ENA]
¡û
>W1710769755
LITB01000018
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
115920
115834
-
Leu
TAA
[ENA]
¡û
>W1710774669
LIYF01000004
Bacillota
Lactococcus cremoris subsp. cremoris [LIYF]
3182
3098
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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