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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.509830 (109 seq.)
>WENV183707068
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4518
4593
+
Lys
TTT
[ENA]
¡û
>WENV183707072
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4884
4959
+
Lys
TTT
[ENA]
¡û
>WENV183710814
PDWI01053886
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
204
279
+
Lys
TTT
[ENA]
¡û
>WENV183714100
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
195
270
+
Lys
TTT
[ENA]
¡û
>WENV183721732
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
847
922
+
Lys
TTT
[ENA]
¡û
>WENV183721737
PDWJ01083259
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1343
1418
+
Lys
TTT
[ENA]
¡û
>ENV08001653
ABNL01003668
coral metagenome; viral fraction from whole Porites compressa tissue extracts taken from an aquarium control experiment that consisted of 5 liters of ambient seawater that was changed every 24 hours; collected at 1 (n =9), 4 (n =9), 16 (n =9), and 64 (n =9) hours
43
118
+
Lys
TTT
[ENA]
¡û
>WENV170012860
ASRP01003157
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1139
1214
+
Lys
TTT
[ENA]
¡û
>WENV170012957
ASRQ01000232
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
11359
11434
+
Lys
TTT
[ENA]
¡û
>WENV170014450
AYRG01000277
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
76
1
-
Lys
TTT
[ENA]
¡û
>WENV170646444
JQGR01004907
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
95
20
-
Lys
TTT
[ENA]
¡û
>C181196955
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598965
598890
-
Lys
TTT
-
¡û
>C181196959
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598609
598534
-
Lys
TTT
-
¡û
>C181197015
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
591368
591293
-
Lys
TTT
-
¡û
>C181197019
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
591006
590931
-
Lys
TTT
-
¡û
>C181197023
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
590657
590582
-
Lys
TTT
-
¡û
>C191084511
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
553337
553262
-
Lys
TTT
-
¡û
>C191084515
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552993
552918
-
Lys
TTT
-
¡û
>C191084519
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552649
552574
-
Lys
TTT
-
¡û
>C191084680
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
653427
653352
-
Lys
TTT
-
¡û
>C191084684
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
653024
652949
-
Lys
TTT
-
¡û
>C191084688
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652621
652546
-
Lys
TTT
-
¡û
>C191147215
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
540075
540000
-
Lys
TTT
-
¡û
>C191147219
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
539716
539641
-
Lys
TTT
-
¡û
>W1911413061
NWVW01000011
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
47340
47265
-
Lys
TTT
[ENA]
¡û
>W1911413065
NWVW01000011
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
46936
46861
-
Lys
TTT
[ENA]
¡û
>W1911413104
NWVX01000015
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16844
16769
-
Lys
TTT
[ENA]
¡û
>W1911413108
NWVX01000015
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16440
16365
-
Lys
TTT
[ENA]
¡û
>W1911419355
NXAO01000009
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
28835
28760
-
Lys
TTT
[ENA]
¡û
>W1911419381
NXAO01000026
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
62107
62182
+
Lys
TTT
[ENA]
¡û
>W1911419399
NXAO01000099
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
479
404
-
Lys
TTT
[ENA]
¡û
>W1911419403
NXAO01000099
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
76
1
-
Lys
TTT
[ENA]
¡û
>W1911424166
NXFY01000005
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
150558
150633
+
Lys
TTT
[ENA]
¡û
>W1911424206
NXFY01000113
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
175
250
+
Lys
TTT
[ENA]
¡û
>W1911426247
NXIE01000008
Campylobacterota
Haloarcobacter mediterraneus F156-34 [NXIE]
16535
16460
-
Lys
TTT
[ENA]
¡û
>W1911426251
NXIE01000008
Campylobacterota
Haloarcobacter mediterraneus F156-34 [NXIE]
16180
16105
-
Lys
TTT
[ENA]
¡û
>W1911426265
NXIF01000017
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
12682
12757
+
Lys
TTT
[ENA]
¡û
>W1911576161
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
74109
74034
-
Lys
TTT
[ENA]
¡û
>W1911576165
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
73745
73670
-
Lys
TTT
[ENA]
¡û
>W1911576291
PDJX01000007
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
641
566
-
Lys
TTT
[ENA]
¡û
>W1911576295
PDJX01000007
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
297
222
-
Lys
TTT
[ENA]
¡û
>W1911576334
PDJX01000236
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
175
250
+
Lys
TTT
[ENA]
¡û
>W1911576351
PDJY01000033
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
30296
30221
-
Lys
TTT
[ENA]
¡û
>W1911576355
PDJY01000033
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
29893
29818
-
Lys
TTT
[ENA]
¡û
>W1911576359
PDJY01000033
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
29490
29415
-
Lys
TTT
[ENA]
¡û
>W1911576494
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
31069
30994
-
Lys
TTT
[ENA]
¡û
>W1911576498
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30715
30640
-
Lys
TTT
[ENA]
¡û
>W1911576562
PDKD01000194
Campylobacterota
Arcobacter trophiarum LMG 25534 [PDKD]
199
124
-
Lys
TTT
[ENA]
¡û
>W1911576595
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73685
73610
-
Lys
TTT
[ENA]
¡û
>W1911576599
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73323
73248
-
Lys
TTT
[ENA]
¡û
>W1911576631
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
236372
236297
-
Lys
TTT
[ENA]
¡û
>W1911576665
PDKG01000005
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
291
216
-
Lys
TTT
[ENA]
¡û
>W1911576886
PDKL01000013
Campylobacterota
Arcobacter bivalviorum F118-4 [PDKL]
72271
72196
-
Lys
TTT
[ENA]
¡û
>W1911576890
PDKL01000013
Campylobacterota
Arcobacter bivalviorum F118-4 [PDKL]
71915
71840
-
Lys
TTT
[ENA]
¡û
>W1911576927
PDKM01000009
Campylobacterota
Arcobacter bivalviorum CECT 7835 [PDKM]
72304
72229
-
Lys
TTT
[ENA]
¡û
>W1911576931
PDKM01000009
Campylobacterota
Arcobacter bivalviorum CECT 7835 [PDKM]
71948
71873
-
Lys
TTT
[ENA]
¡û
>W1911576942
PDKN01000001
Campylobacterota
Arcobacter sp. CECT 8987 [PDKN]
69920
69845
-
Lys
TTT
[ENA]
¡û
>W1911576946
PDKN01000001
Campylobacterota
Arcobacter sp. CECT 8987 [PDKN]
69513
69438
-
Lys
TTT
[ENA]
¡û
>SRA1001669
SRR001078.23870
Coral Stressors, viral fraction from whole Porites compressa tissue extracts; an aquarium control experiment (SRP000166)
43
118
+
Lys
TTT
[SRA]
>W1810295888
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
40233
40158
-
Lys
TTT
[ENA]
¡û
>W1810295892
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39829
39754
-
Lys
TTT
[ENA]
¡û
>W1810295896
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39425
39350
-
Lys
TTT
[ENA]
¡û
>W2011138854
NWVW01000011
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
47340
47265
-
Lys
TTT
[ENA]
¡û
>W2011138858
NWVW01000011
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
46936
46861
-
Lys
TTT
[ENA]
¡û
>W2011138897
NWVX01000015
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16844
16769
-
Lys
TTT
[ENA]
¡û
>W2011138901
NWVX01000015
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
16440
16365
-
Lys
TTT
[ENA]
¡û
>W2011139253
NXAO01000009
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
28835
28760
-
Lys
TTT
[ENA]
¡û
>W2011139279
NXAO01000026
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
62107
62182
+
Lys
TTT
[ENA]
¡û
>W2011139297
NXAO01000099
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
479
404
-
Lys
TTT
[ENA]
¡û
>W2011139301
NXAO01000099
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
76
1
-
Lys
TTT
[ENA]
¡û
>W2011143936
NXFY01000005
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
150558
150633
+
Lys
TTT
[ENA]
¡û
>W2011143976
NXFY01000113
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
175
250
+
Lys
TTT
[ENA]
¡û
>W2011145105
NXIE01000008
Campylobacterota
Haloarcobacter mediterraneus F156-34 [NXIE]
16535
16460
-
Lys
TTT
[ENA]
¡û
>W2011145109
NXIE01000008
Campylobacterota
Haloarcobacter mediterraneus F156-34 [NXIE]
16180
16105
-
Lys
TTT
[ENA]
¡û
>W2011145123
NXIF01000017
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
12682
12757
+
Lys
TTT
[ENA]
¡û
>W2011185975
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
74109
74034
-
Lys
TTT
[ENA]
¡û
>W2011185979
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
73745
73670
-
Lys
TTT
[ENA]
¡û
>W2011186105
PDJX01000007
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
641
566
-
Lys
TTT
[ENA]
¡û
>W2011186109
PDJX01000007
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
297
222
-
Lys
TTT
[ENA]
¡û
>W2011186148
PDJX01000236
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
175
250
+
Lys
TTT
[ENA]
¡û
>W2011186165
PDJY01000033
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
30296
30221
-
Lys
TTT
[ENA]
¡û
>W2011186169
PDJY01000033
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
29893
29818
-
Lys
TTT
[ENA]
¡û
>W2011186173
PDJY01000033
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
29490
29415
-
Lys
TTT
[ENA]
¡û
>W2011186308
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
31069
30994
-
Lys
TTT
[ENA]
¡û
>W2011186312
PDKC01000025
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
30715
30640
-
Lys
TTT
[ENA]
¡û
>W2011186376
PDKD01000194
Campylobacterota
Arcobacter trophiarum LMG 25534 [PDKD]
199
124
-
Lys
TTT
[ENA]
¡û
>W2011186409
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73685
73610
-
Lys
TTT
[ENA]
¡û
>W2011186413
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73323
73248
-
Lys
TTT
[ENA]
¡û
>W2011186445
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
236372
236297
-
Lys
TTT
[ENA]
¡û
>W2011186479
PDKG01000005
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
291
216
-
Lys
TTT
[ENA]
¡û
>W2011186700
PDKL01000013
Campylobacterota
Arcobacter bivalviorum F118-4 [PDKL]
72271
72196
-
Lys
TTT
[ENA]
¡û
>W2011186704
PDKL01000013
Campylobacterota
Arcobacter bivalviorum F118-4 [PDKL]
71915
71840
-
Lys
TTT
[ENA]
¡û
>W2011186741
PDKM01000009
Campylobacterota
Arcobacter bivalviorum CECT 7835 [PDKM]
72304
72229
-
Lys
TTT
[ENA]
¡û
>W2011186745
PDKM01000009
Campylobacterota
Arcobacter bivalviorum CECT 7835 [PDKM]
71948
71873
-
Lys
TTT
[ENA]
¡û
>W2011186756
PDKN01000001
Campylobacterota
Arcobacter sp. CECT 8987 [PDKN]
69920
69845
-
Lys
TTT
[ENA]
¡û
>W2011186760
PDKN01000001
Campylobacterota
Arcobacter sp. CECT 8987 [PDKN]
69513
69438
-
Lys
TTT
[ENA]
¡û
>W2011961957
VANU01000001
Campylobacterota
Arcobacter sp. CAU 1517 [VANU]
535598
535673
+
Lys
TTT
[ENA]
¡û
>W2011961962
VANU01000001
Campylobacterota
Arcobacter sp. CAU 1517 [VANU]
536107
536182
+
Lys
TTT
[ENA]
¡û
>W2110021077
BMEF01000002
Campylobacterota
Arcobacter pacificus CGMCC 1.11011 [BMEF]
47283
47208
-
Lys
TTT
[ENA]
¡û
>W2110021081
BMEF01000002
Campylobacterota
Arcobacter pacificus CGMCC 1.11011 [BMEF]
46924
46849
-
Lys
TTT
[ENA]
¡û
>C231428928
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
692586
692511
-
Lys
TTT
-
¡û
>C231428932
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
692227
692152
-
Lys
TTT
-
¡û
>C231428936
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
691868
691793
-
Lys
TTT
-
¡û
>C241068638
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
673902
673827
-
Lys
TTT
-
¡û
>C241068642
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
673498
673423
-
Lys
TTT
-
¡û
>C241068646
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
673094
673019
-
Lys
TTT
-
¡û
>W1710602820
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57818
57743
-
Lys
TTT
[ENA]
¡û
>W1710602824
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57417
57342
-
Lys
TTT
[ENA]
¡û
>W1710602828
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57016
56941
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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