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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510559 (33 seq.)
>W1711642861
MPZQ01000021
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
17243
17168
-
Val
TAC
[ENA]
¡û
>W1711642905
MPZR01000021
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
1498
1423
-
Val
TAC
[ENA]
¡û
>W1711642993
MPZT01000009
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
1498
1423
-
Val
TAC
[ENA]
¡û
>W1711643010
MPZU01000001
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
1500
1425
-
Val
TAC
[ENA]
¡û
>W1711643139
MPZX01000001
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
1531611
1531686
+
Val
TAC
[ENA]
¡û
>W1711947348
NBOA01000005
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
9177
9102
-
Val
TAC
[ENA]
¡û
>W1711958997
NBXF01000006
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
94166
94241
+
Val
TAC
[ENA]
¡û
>W141082488
AUNB01000009
Alphaproteobacteria
Thioclava indica DT23-4 [AUNB]
61311
61236
-
Val
TAC
[ENA]
¡û
>WENV170486455
CEVN01272627
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
236
161
-
Val
TAC
[ENA]
¡û
>W1910443144
FWFV01000001
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
563574
563499
-
Val
TAC
[ENA]
¡û
>W1911575805
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
1768323
1768398
+
Val
TAC
[ENA]
¡û
>W1911810966
QZCG01000005
Alphaproteobacteria
Paracoccus sp. 1011MAR3C25 [QZCG]
289050
288975
-
Val
TAC
[ENA]
¡û
>W2010406508
FWFV01000001
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
563574
563499
-
Val
TAC
[ENA]
¡û
>W2011185619
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
1768323
1768398
+
Val
TAC
[ENA]
¡û
>W2011345624
QZCG01000005
Alphaproteobacteria
Paracoccus sp. 1011MAR3C25 [QZCG]
289050
288975
-
Val
TAC
[ENA]
¡û
>W2011654475
SOBC01000002
Alphaproteobacteria
Thioclava sp. ES.032 [SOBC]
3199003
3199078
+
Val
TAC
[ENA]
¡û
>W2011952482
UXAS01000023
Alphaproteobacteria
Rhodobacteraceae bacterium THAF1 [UXAS]
14099
14174
+
Val
TAC
[ENA]
¡û
>W2011978570
VCQM01000005
Alphaproteobacteria
Thioclava sp. BHET1 [VCQM]
6081
6156
+
Val
TAC
[ENA]
¡û
>W2012106122
VOPL01000001
Alphaproteobacteria
Paracoccus sp. TK008 [VOPL]
723160
723085
-
Val
TAC
[ENA]
¡û
>C211094080
CP053562
Alphaproteobacteria
Thioclava electrotropha Elox9 [CP053562]
1931905
1931980
+
Val
TAC
-
¡û
>C231569214
CP115757
Alphaproteobacteria
Paracoccus sp. SCSIO 75233 [CP115757]
1349379
1349304
-
Val
TAC
-
¡û
>C231569281
CP115775
Alphaproteobacteria
Paracoccus sp. SCSIO 80058 [CP115775]
956728
956803
+
Val
TAC
-
¡û
>C241096400
CP045420
Alphaproteobacteria
Palleronia sp. THAF1 [CP045420]
2115410
2115335
-
Val
TAC
-
¡û
>C241151044
CP051542
Alphaproteobacteria
Paracoccus sanguinis OM2164 [CP051542]
2860889
2860964
+
Val
TAC
-
¡û
>C241151046
CP051542
Alphaproteobacteria
Paracoccus sanguinis OM2164 [CP051542]
2950319
2950394
+
Val
TAC
-
¡û
>W1511348665
JRKP01000085
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
1245
1320
+
Val
TAC
[ENA]
¡û
>W1511348703
JRKQ01000079
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
13862
13787
-
Val
TAC
[ENA]
¡û
>W1511348721
JRKR01000002
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
68187
68262
+
Val
TAC
[ENA]
¡û
>W1511348739
JRKR01000038
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
3054
3129
+
Val
TAC
[ENA]
¡û
>W1511348849
JRKT01000087
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
1255
1330
+
Val
TAC
[ENA]
¡û
>W1710528205
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
222862
222787
-
Val
TAC
[ENA]
¡û
>W1710562799
FOPF01000001
Alphaproteobacteria
Palleronia marisminoris [FOPF]
563762
563687
-
Val
TAC
[ENA]
¡û
>W1710599319
FTOQ01000002
Alphaproteobacteria
Roseivivax lentus [FTOQ]
571304
571379
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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