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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.511537 (12 seq.)
>WENV170722477
LSQX01230822
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2416
2491
+
His
GTG
[ENA]
¢þ
>C181143832
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
2013320
2013394
+
His
GTG
-
¡û
>C181226254
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
366465
366390
-
His
GTG
-
¡û
>C191114610
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
1785461
1785536
+
His
GTG
-
¡û
>C191213024
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
2704678
2704752
+
His
GTG
-
¡û
>W1810568936
QEEZ01000003
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
51041
50967
-
His
GTG
[ENA]
¡û
>C151007273
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
2142177
2142252
+
His
GTG
[Ensembl]
¡û
>W1511500706
JXBH01000027
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
16088
16163
+
His
GTG
[ENA]
¡û
>W1511524480
JYEG01000023
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
16108
16183
+
His
GTG
[ENA]
¡û
>W1610069805
BCSU01000005
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
49121
49046
-
His
GTG
[ENA]
¡û
>W1710067178
BCSU01000005
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
49121
49046
-
His
GTG
[ENA]
¡û
>W1710552142
FOGQ01000004
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
65213
65138
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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