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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.511595 (70 seq.)
>W1710863145
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
181413
181488
+
Arg
CCG
[ENA]
¡û
>W1710871789
LMLM01000023
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
83098
83023
-
Arg
CCG
[ENA]
¡û
>W1710874780
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
149977
149902
-
Arg
CCG
[ENA]
¡û
>W1710893489
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
130886
130811
-
Arg
CCG
[ENA]
¡û
>W1711046637
LROM01000134
Betaproteobacteria
Duganella phyllosphaerae [LROM]
47082
47007
-
Arg
CCG
[ENA]
¡û
>W131176162
ARJV01000017
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
55788
55713
-
Arg
CCG
[ENA]
¡û
>C171130504
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2572072
2572147
+
Arg
CCG
-
¡û
>C010368
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
3311383
3311308
-
Arg
CCG
[Ensembl]
¡û
>C011132
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
3972038
3971963
-
Arg
CCG
[Ensembl]
¡û
>WENV180022321
FTFY01000808
[FTFY] metagenome; soil
78
3
-
Arg
CCG
[ENA]
¡û
>WENV180026676
FTIU01019335
[FTIU] metagenome; soil
253
178
-
Arg
CCG
[ENA]
¡û
>WENV183744369
PJUK01012998
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
398
323
-
Arg
CCG
[ENA]
¡û
>WENV170708871
LNFM01000012
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
48023
48098
+
Arg
CCG
[ENA]
¡û
>W141821359
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
4463964
4464039
+
Arg
CCG
[ENA]
¡û
>W1911572361
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
2182994
2183069
+
Arg
CCG
[ENA]
¡û
>W1911647593
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
141500
141425
-
Arg
CCG
[ENA]
¡û
>W1911802907
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
3193405
3193330
-
Arg
CCG
[ENA]
¡û
>W1810068698
PDZP01000001
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
94748
94673
-
Arg
CCG
[ENA]
¡û
>W1810297198
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
313600
313675
+
Arg
CCG
[ENA]
¡û
>W1810400023
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1287071
1286996
-
Arg
CCG
[ENA]
¡û
>C151062607
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
5478037
5478112
+
Arg
CCG
[Ensembl]
¡û
>W2010534915
JAAOZT010000009
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JAAOZT]
57456
57531
+
Arg
CCG
[ENA]
¡û
>W2010695125
JACHBX010000002
Betaproteobacteria
Massilia aurea AT3.2 [JACHBX]
638955
638880
-
Arg
CCG
[ENA]
¡û
>W2010702829
JACHHQ010000003
Betaproteobacteria
Glaciimonas immobilis DSM 23240 [JACHHQ]
147630
147705
+
Arg
CCG
[ENA]
¡û
>W2011182782
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
2182994
2183069
+
Arg
CCG
[ENA]
¡û
>W2011235577
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
141500
141425
-
Arg
CCG
[ENA]
¡û
>W2011344538
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sp. K1S02-23 [QYUQ]
3193405
3193330
-
Arg
CCG
[ENA]
¡û
>W2011353334
RAIL01000001
Betaproteobacteria
Collimonas fungivorans ES_Al-A1 [RAIL]
446311
446236
-
Arg
CCG
[ENA]
¡û
>W2011647587
SNWF01000004
Betaproteobacteria
Herminiimonas fonticola DSM 18555 [SNWF]
313568
313643
+
Arg
CCG
[ENA]
¡û
>W2012047562
VIVV01000022
Betaproteobacteria
Collimonas arenae 515 [VIVV]
20715
20790
+
Arg
CCG
[ENA]
¡û
>W2012089083
VMEK01000009
Betaproteobacteria
Zoogloea ramigera ATCC 19544 [VMEK]
74146
74071
-
Arg
CCG
[ENA]
¡û
>W2012144269
VTTH01000007
Betaproteobacteria
Oxalobacteraceae bacterium CHu64-6-4 [VTTH]
235437
235362
-
Arg
CCG
[ENA]
¡û
>W2012325790
WHIV01000004
Betaproteobacteria
Duganella sp. FT27W [WHIV]
640336
640261
-
Arg
CCG
[ENA]
¡û
>W2012337199
WINI01000004
Betaproteobacteria
Glaciimonas sp. GS1 [WINI]
312860
312933
+
Arg
CCG
[ENA]
¡û
>W2012399078
WNKW01000004
Betaproteobacteria
Pseudoduganella danionis DSM 103461 [WNKW]
136199
136124
-
Arg
CCG
[ENA]
¡û
>W2012469864
WWCR01000003
Betaproteobacteria
Duganella sp. FT134W [WWCR]
205500
205425
-
Arg
CCG
[ENA]
¡û
>W2012469935
WWCS01000001
Betaproteobacteria
Duganella pernnla FT109W [WWCS]
448400
448475
+
Arg
CCG
[ENA]
¡û
>W2012509431
WXXL01000044
Betaproteobacteria
PMB3(1) [WXXL]
68079
68004
-
Arg
CCG
[ENA]
¡û
>W2110020073
BMDI01000001
Betaproteobacteria
Oxalicibacterium faecigallinarum CCM 2767 [BMDI]
2031786
2031861
+
Arg
CCG
[ENA]
¡û
>W2110097049
CAJEVT010000001
Betaproteobacteria
Herminiimonas sp. Marseille-P9896 [CAJEVT]
375024
375099
+
Arg
CCG
[ENA]
¡û
>W2110290465
JACYUC010000004
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8763 CFBP8763 [JACYUC]
307991
308066
+
Arg
CCG
[ENA]
¡û
>W2110290581
JACYUE010000003
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8761 CFBP8761 [JACYUE]
214132
214057
-
Arg
CCG
[ENA]
¡û
>W2110290783
JACYUN010000003
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8755 CFBP8755 [JACYUN]
347935
348010
+
Arg
CCG
[ENA]
¡û
>W2110290938
JACYUQ010000004
Betaproteobacteria
Oxalobacteraceae sp. CFBP 13730 CFBP13730 [JACYUQ]
383779
383854
+
Arg
CCG
[ENA]
¡û
>W2110291269
JACYUX010000002
Betaproteobacteria
Oxalobacteraceae sp. CFBP 8753 CFBP8753 [JACYUX]
193526
193451
-
Arg
CCG
[ENA]
¡û
>W2110291727
JACYVK010000004
Betaproteobacteria
Oxalobacteraceae sp. CFBP 13708 CFBP13708 [JACYVK]
250183
250108
-
Arg
CCG
[ENA]
¡û
>W2110360981
JADOEL010000006
Betaproteobacteria
Herminiimonas contaminans Marseille-Q4544 [JADOEL]
70567
70642
+
Arg
CCG
[ENA]
¡û
>W2110428657
JAEMNU010000022
Betaproteobacteria
Rugamonas sp. CCM 8940 [JAEMNU]
185029
185104
+
Arg
CCG
[ENA]
¡û
>W2110566792
JAGQED010000021
Betaproteobacteria
Collimonas antrihumi DSM 104040 [JAGQED]
73484
73559
+
Arg
CCG
[ENA]
¡û
>W2110566822
JAGQEE010000002
Betaproteobacteria
Collimonas sp. RLT1W51 [JAGQEE]
397204
397279
+
Arg
CCG
[ENA]
¡û
>W2110566853
JAGQEF010000002
Betaproteobacteria
Collimonas sp. RXD172-2 [JAGQEF]
137686
137611
-
Arg
CCG
[ENA]
¡û
>C211274247
CP070304
Betaproteobacteria
Glaciimonas sp. PAMC28666 [CP070304]
2092169
2092094
-
Arg
CCG
-
¡û
>C231648735
CP122407
Betaproteobacteria
Rugamonas sp. DEMB1 [CP122407]
6201585
6201510
-
Arg
CCG
-
¡û
>C241354695
CP140152
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [CP140152]
5826792
5826717
-
Arg
CCG
-
¡û
>C11105074
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
5010463
5010538
+
Arg
CCG
[Ensembl]
¡û
>W1511683775
LFLS01000022
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
67071
67146
+
Arg
CCG
[ENA]
¡û
>C161053595
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
5429428
5429503
+
Arg
CCG
[Ensembl]
¡û
>C161053650
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
4619066
4619141
+
Arg
CCG
-
¡û
>C161053694
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
5605159
5605234
+
Arg
CCG
[Ensembl]
¡û
>C161053746
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
4604445
4604520
+
Arg
CCG
[Ensembl]
¡û
>C161053794
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
5463490
5463565
+
Arg
CCG
[Ensembl]
¡û
>W1610725491
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
181413
181488
+
Arg
CCG
[ENA]
¡û
>W1610734135
LMLM01000023
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
83098
83023
-
Arg
CCG
[ENA]
¡û
>W1610737126
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
149977
149902
-
Arg
CCG
[ENA]
¡û
>W1610753755
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
130886
130811
-
Arg
CCG
[ENA]
¡û
>W1710530358
FNOR01000007
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
147362
147437
+
Arg
CCG
[ENA]
¡û
>W1710556459
FOKF01000031
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
707
632
-
Arg
CCG
[ENA]
¡û
>W1710557531
FOLC01000006
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
20871
20946
+
Arg
CCG
[ENA]
¡û
>W1710564214
FOQI01000002
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
349702
349627
-
Arg
CCG
[ENA]
¡û
>W1710568784
FOTW01000007
Betaproteobacteria
Rugamonas rubra [FOTW]
159577
159502
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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