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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51212 (89 seq.)
>W1712038597
NFJB01000002
Bacteroidota
Parabacteroides sp. An277 [NFJB]
5722
5635
-
Leu
TAA
[ENA]
¡û
>W1712041216
NFKX01000001
Bacteroidota
Phocaeicola dorei [NFKX]
426428
426341
-
Leu
TAA
[ENA]
¡û
>W131160652
AQWS01000030
Bacteroidota
Bacteroides propionicifaciens DSM 19291 [AQWS]
11762
11675
-
Leu
TAA
[ENA]
¡û
>W141007732
AGXW01000009
Bacteroidota
Bacteroides finegoldii CL09T03C10 [AGXW]
320725
320812
+
Leu
TAA
[ENA]
¡û
>WENV180322048
OBKR01001049
[OBKR] human gut metagenome; feces
25754
25839
+
Leu
TAA
[ENA]
¡û
>WENV180339597
OBLI01005988
[OBLI] pig gut metagenome; faeces
7817
7732
-
Leu
TAA
[ENA]
¡û
>WENV180552980
OCJH01294288
[OCJH] human gut metagenome; human gut
131
45
-
Leu
TAA
[ENA]
¡û
>WENV180562344
OCLB01002081
[OCLB] human gut metagenome; human gut
1298
1213
-
Leu
TAA
[ENA]
¡û
>W141087613
AUTU01000022
Bacteroidota
Bacteroidetes bacterium oral taxon 272 oral taxon 272 str. F0290 [AUTU]
10752
10667
-
Leu
TAA
[ENA]
¡û
>WENV180918885
ODTG01004344
[ODTG] human metagenome; G_DNA_Stool
5489
5404
-
Leu
TAA
[ENA]
¡û
>WENV181377874
OFRA01040586
[OFRA] wastewater metagenome; Lake Maggiore Verbania
599
687
+
Leu
TAA
[ENA]
¡û
>WENV181419409
OGCN01000102
[OGCN] human gut metagenome; human gut
102537
102622
+
Leu
TAA
[ENA]
¡û
>WENV181424674
OGCP01004874
[OGCP] metagenome; Human gut stool
1718
1633
-
Leu
TAA
[ENA]
¡û
>W08009622
ABQC02000002
Bacteroidota
Phocaeicola plebeius DSM 17135 [ABQC]
74675
74588
-
Leu
TAA
[ENA]
¡û
>WENV181457315
OGEI01000102
[OGEI] metagenome; Human gut stool
38145
38230
+
Leu
TAA
[ENA]
¡û
>W141143923
AWSV01000116
Bacteroidota
Bacteroides pyogenes F0041 [AWSV]
67322
67407
+
Leu
TAA
[ENA]
¡û
>WENV181572770
OGJR01000086
[OGJR] metagenome; Human gut stool
55165
55080
-
Leu
TAA
[ENA]
¡û
>WENV181650761
OGNV01000011
[OGNV] metagenome; Human gut stool
136607
136692
+
Leu
TAA
[ENA]
¡û
>WENV181748781
OGQO01007342
[OGQO] human gut metagenome; faeces
1407
1322
-
Leu
TAA
[ENA]
¡û
>WENV182060827
OHET01000082
[OHET] human gut metagenome; feces
33380
33465
+
Leu
TAA
[ENA]
¡û
>WENV182071412
OHFL01032093
[OHFL] human gut metagenome; feces
77
162
+
Leu
TAA
[ENA]
¡û
>WENV182082167
OHGK01031105
[OHGK] human gut metagenome; feces
95
10
-
Leu
TAA
[ENA]
¡û
>WENV182121252
OHJK01008798
[OHJK] human gut metagenome; feces
2043
2128
+
Leu
TAA
[ENA]
¡û
>WENV182133275
OHKG01000071
[OHKG] human gut metagenome; feces
18640
18555
-
Leu
TAA
[ENA]
¡û
>WENV182162818
OHMI01000080
[OHMI] human gut metagenome; feces
33380
33465
+
Leu
TAA
[ENA]
¡û
>WENV182196008
OHPF01000082
[OHPF] human gut metagenome; feces
33380
33465
+
Leu
TAA
[ENA]
¡û
>WENV182221778
OHQT01008314
[OHQT] human gut metagenome; feces
26
111
+
Leu
TAA
[ENA]
¡û
>WENV182244129
OHSI01022755
[OHSI] human gut metagenome; feces
784
869
+
Leu
TAA
[ENA]
¡û
>W141225844
BAJO01000041
Bacteroidota
Bacteroides propionicifaciens JCM 14649 [BAJO]
11512
11425
-
Leu
TAA
[ENA]
¡û
>WENV182524425
OIWT01000197
[OIWT] human gut metagenome; faeces
82598
82513
-
Leu
TAA
[ENA]
¡û
>WENV182666114
OJNH01009552
[OJNH] human gut metagenome; feces
4483
4398
-
Leu
TAA
[ENA]
¡û
>WENV182905508
OKTC01000121
[OKTC] human gut metagenome; feces
11065
10980
-
Leu
TAA
[ENA]
¡û
>WENV183134298
OLOD01000055
[OLOD] human gut metagenome; faeces
5915
6000
+
Leu
TAA
[ENA]
¡û
>WENV183145879
OLOM01001509
[OLOM] human gut metagenome; faeces
4303
4388
+
Leu
TAA
[ENA]
¡û
>WENV183281236
OLSB01053255
[OLSB] human gut metagenome; faeces
826
911
+
Leu
TAA
[ENA]
¡û
>WENV183440417
OMCH01000010
[OMCH] human gut metagenome; feces
141318
141233
-
Leu
TAA
[ENA]
¡û
>WENV183536382
OOAG01003431
[OOAG] human gut metagenome; human gut
7125
7040
-
Leu
TAA
[ENA]
¡û
>WENV183591406
OOCY01000083
[OOCY] human gut metagenome; human gut
90870
90955
+
Leu
TAA
[ENA]
¡û
>WENV183596270
OODE01000050
[OODE] human gut metagenome; human gut
9074
8989
-
Leu
TAA
[ENA]
¡û
>WENV183605525
OODM01005488
[OODM] human gut metagenome; human gut
2270
2355
+
Leu
TAA
[ENA]
¡û
>WENV183760635
PPYE01233992
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
94
179
+
Leu
TAA
[ENA]
¡û
>C191219321
LR215980
Bacteroidota
Paraprevotella xylaniphila YIT 11841 [LR215980]
2365876
2365961
+
Leu
TAA
-
¡û
>W09111845
ABXI02000053
Bacteroidota
Bacteroides finegoldii DSM 17565 [ABXI]
56570
56483
-
Leu
TAA
[ENA]
¡û
>W09119279
ACDR01000010
Bacteroidota
Bacteroides sp. 4_3_47FAA [ACDR]
184938
185025
+
Leu
TAA
[ENA]
¡û
>W1911498392
OCTR01000002
Bacteroidota
Parabacteroides sp. Marseille-P3668 [OCTR]
343433
343518
+
Leu
TAA
[ENA]
¡û
>W1810793606
QRJV01000002
Bacteroidota
Phocaeicola vulgatus AM17-30 [QRJV]
100179
100094
-
Leu
TAA
[ENA]
¡û
>C151030097
CP007619
Bacteroidota
Phocaeicola dorei [CP007619]
5435512
5435425
-
Leu
TAA
-
¡û
>C151036519
CP008741
Bacteroidota
Phocaeicola dorei [CP008741]
1983917
1984004
+
Leu
TAA
-
¡û
>C151042591
CP009057
Bacteroidota
Phocaeicola dorei [CP009057]
2044875
2044962
+
Leu
TAA
-
¡û
>W2010139974
BLLV01000036
Bacteroidota
Bacteroidaceae bacterium [BLLV]
71
156
+
Leu
TAA
[ENA]
¡û
>W2010248846
CABIXD020000005
Bacteroidota
Bacteroidaceae bacterium [CABIXD]
157402
157487
+
Leu
TAA
[ENA]
¡û
>W2010260043
CABJEV020000030
Bacteroidota
Bacteroides massiliensis [CABJEV]
4365
4280
-
Leu
TAA
[ENA]
¡û
>W2010284568
CABMKK010000002
Bacteroidota
Bacteroidales bacterium [CABMKK]
343433
343518
+
Leu
TAA
[ENA]
¡û
>W2010393331
FQSB01000034
Bacteroidota
Mediterranea massiliensis Marseille-P2645 [FQSB]
3571
3656
+
Leu
TAA
[ENA]
¡û
>W2011159296
OCTR01000002
Bacteroidota
Parabacteroides sp. Marseille-P3668 [OCTR]
343433
343518
+
Leu
TAA
[ENA]
¡û
>ENV09002797
ADGC01028132
Wallaby gut metagenome MeugComb_C1
502
415
-
Leu
TAA
[ENA]
¡û
>W2110224252
JACJLE010000015
Bacteroidota
Bacteroides caecigallinarum An496 [JACJLE]
3006
2921
-
Leu
TAA
[ENA]
¡û
>W2110224718
JACJLP010000028
Bacteroidota
Bacteroides caecigallinarum An428b [JACJLP]
13511
13426
-
Leu
TAA
[ENA]
¡û
>W2110224793
JACJLQ010000074
Bacteroidota
Bacteroides caecigallinarum An428a [JACJLQ]
1733
1818
+
Leu
TAA
[ENA]
¡û
>W2110225199
JACJLX010000014
Bacteroidota
Bacteroides caecigallinarum An406 [JACJLX]
74744
74829
+
Leu
TAA
[ENA]
¡û
>W2110238737
JACLYZ010000002
Bacteroidota
Mediterranea massiliensis An772 [JACLYZ]
3750
3665
-
Leu
TAA
[ENA]
¡û
>W2110345375
JADMXX010000005
Bacteroidota
Phocaeicola dorei D31t1_170403_C3 [JADMXX]
315965
316050
+
Leu
TAA
[ENA]
¡û
>W2110347668
JADNBC010000004
Bacteroidota
Phocaeicola dorei 1001095H_141210_C3 [JADNBC]
34004
34089
+
Leu
TAA
[ENA]
¡û
>W2110348134
JADNBX010000002
Bacteroidota
Phocaeicola dorei 1001275B_160808_H6 [JADNBX]
375002
375087
+
Leu
TAA
[ENA]
¡û
>W2110351810
JADNGV010000073
Bacteroidota
Bacteroides finegoldii BSD2780120874b_170522_E1 [JADNGV]
90
175
+
Leu
TAA
[ENA]
¡û
>W2110357043
JADNOF010000032
Bacteroidota
Phocaeicola massiliensis D52t1_170925_G7 [JADNOF]
234
149
-
Leu
TAA
[ENA]
¡û
>W2110358281
JADNPQ010000015
Bacteroidota
Bacteroides finegoldii D59t2_181005_D3 [JADNPQ]
120939
120854
-
Leu
TAA
[ENA]
¡û
>W2110374188
JADRFU010000034
Bacteroidota
Bacteroides pyogenes DD46 [JADRFU]
41743
41658
-
Leu
TAA
[ENA]
¡û
>W2110374825
JADRGH010000015
Bacteroidota
Bacteroides pyogenes DD33 [JADRGH]
16299
16384
+
Leu
TAA
[ENA]
¡û
>W2110463254
JAFBJE010000002
Bacteroidota
Phocaeicola dorei PtFD8M1 [JAFBJE]
321415
321500
+
Leu
TAA
[ENA]
¡û
>W2110463372
JAFBJG010000001
Bacteroidota
Phocaeicola dorei PtFSb8 [JAFBJG]
326775
326690
-
Leu
TAA
[ENA]
¡û
>W2110634851
JAHONO010000060
Bacteroidota
Phocaeicola dorei DFI.4.132 [JAHONO]
25408
25493
+
Leu
TAA
[ENA]
¡û
>C201305117
CP059856
Bacteroidota
Bacteroides sp. HF-5287 [CP059856]
447783
447698
-
Leu
TAA
-
¡û
>C201309999
LR699004
Bacteroidota
Bacteroides dorei [LR699004]
2044875
2044960
+
Leu
TAA
-
¡û
>C211304276
CP072234
Bacteroidota
Phocaeicola vulgatus CL06T03C24 [CP072234]
4831469
4831384
-
Leu
TAA
-
¡û
>C231463996
CP103067
Bacteroidota
Phocaeicola vulgatus BFG-626 [CP103067]
1081476
1081391
-
Leu
TAA
-
¡û
>C241010355
AP027244
Bacteroidota
Bacteroides finegoldii JCM 13345 [AP027244]
266693
266608
-
Leu
TAA
-
¡û
>C241109767
CP046428
Bacteroidota
Phocaeicola dorei JR05 [CP046428]
4998337
4998252
-
Leu
TAA
-
¡û
>C241263730
CP126056
Bacteroidota
Phocaeicola dorei 2 [CP126056]
129835
129750
-
Leu
TAA
-
¡û
>W11160716
AFFW01000002
Bacteroidota
Bacteroides coprosuis DSM 18011 [AFFW]
467720
467807
+
Leu
TAA
[ENA]
¡û
>W121003812
AFFY01000015
Bacteroidota
Paraprevotella clara YIT 11840 [AFFY]
229457
229370
-
Leu
TAA
[ENA]
¡û
>W1610580591
LBCW01000020
Bacteroidota
Bacteroidales bacterium Barb6XT [LBCW]
8620
8533
-
Leu
TAA
[ENA]
¡û
>W1610580642
LBCX01000055
Bacteroidota
Bacteroidales bacterium Barb4 [LBCX]
7794
7707
-
Leu
TAA
[ENA]
¡û
>W1610580673
LBCY01000057
Bacteroidota
Bacteroidales bacterium Barb6 [LBCY]
8314
8227
-
Leu
TAA
[ENA]
¡û
>W1610580706
LBCZ01000033
Bacteroidota
Bacteroidales bacterium Barb7 [LBCZ]
6407
6322
-
Leu
TAA
[ENA]
¡û
>W1710539812
FNVS01000003
Bacteroidota
Parabacteroides chinchillae [FNVS]
9901
9816
-
Leu
TAA
[ENA]
¡û
>W1710699603
LBCW01000020
Bacteroidota
Bacteroidales bacterium Barb6XT [LBCW]
8620
8533
-
Leu
TAA
[ENA]
¡û
>W1710699654
LBCX01000055
Bacteroidota
Bacteroidales bacterium Barb4 [LBCX]
7794
7707
-
Leu
TAA
[ENA]
¡û
>W1710699685
LBCY01000057
Bacteroidota
Bacteroidales bacterium Barb6 [LBCY]
8314
8227
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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