This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512247 (76 seq.)
>W1710867766
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
742023
742098
+
Thr
CGT
[ENA]
¡û
>W1710869664
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
19260
19185
-
Thr
CGT
[ENA]
¡û
>W1710875042
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
500702
500777
+
Thr
CGT
[ENA]
¡û
>W1710876155
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
433499
433574
+
Thr
CGT
[ENA]
¡û
>W1710876180
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
19222
19147
-
Thr
CGT
[ENA]
¡û
>W131162245
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
1058185
1058260
+
Thr
CGT
[ENA]
¡û
>W1711173298
LWCT01000007
Actinomycetota
Plantibacter sp. H53 [LWCT]
21007
21082
+
Thr
CGT
[ENA]
¡û
>W131184641
ARTB01000002
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
192064
191989
-
Thr
CGT
[ENA]
¡û
>W1711461514
MJGW01000001
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
502410
502485
+
Thr
CGT
[ENA]
¡û
>W1711505302
MKVJ01000019
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
89651
89576
-
Thr
CGT
[ENA]
¡û
>W1711961750
NCSR01000008
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
135995
135920
-
Thr
CGT
[ENA]
¡û
>C171083221
CP018762
Actinomycetota
Microbacterium aurum KACC 15219 [CP018762]
1058561
1058636
+
Thr
CGT
-
¡û
>WENV180016190
FSUF01000129
[FSUF] metagenome; soil
2901
2974
+
Thr
CGT
[ENA]
¡û
>WENV180017680
FSXL01000695
[FSXL] metagenome; soil
17019
17093
+
Thr
CGT
[ENA]
¡û
>WENV180018564
FSZS01000037
[FSZS] metagenome; soil
2470
2395
-
Thr
CGT
[ENA]
¡û
>WENV180018936
FTBD01000009
[FTBD] metagenome; soil
2361
2436
+
Thr
CGT
[ENA]
¡û
>WENV180025591
FTIP01096810
[FTIP] metagenome; soil
137
62
-
Thr
CGT
[ENA]
¡û
>WENV180025933
FTIR01000330
[FTIR] metagenome; soil
4208
4283
+
Thr
CGT
[ENA]
¡û
>WENV180026282
FTIT01000848
[FTIT] metagenome; soil
276
202
-
Thr
CGT
[ENA]
¡û
>WENV180032914
FTKD01003647
[FTKD] metagenome; soil
265
340
+
Thr
CGT
[ENA]
¡û
>WENV180256783
OBEQ010852715
[OBEQ] groundwater metagenome; groundwater
345
420
+
Thr
CGT
[ENA]
¡û
>W141146502
AWVQ01000198
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
17291
17216
-
Thr
CGT
[ENA]
¡û
>W141188421
AYMR01000030
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
14100
14173
+
Thr
CGT
[ENA]
¡û
>WENV183697887
OUNK010255357
[OUNK] metagenome; soil
1707
1781
+
Thr
CGT
[ENA]
¡û
>WENV183697937
OUNK010430222
[OUNK] metagenome; soil
209
284
+
Thr
CGT
[ENA]
¡û
>C191101007
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
3871703
3871628
-
Thr
CGT
-
¡û
>C191182585
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
830215
830140
-
Thr
CGT
-
¡û
>W1911671591
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
804335
804260
-
Thr
CGT
[ENA]
¡û
>W1810091037
PGGU01000004
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
251292
251366
+
Thr
CGT
[ENA]
¡û
>W1810684449
QKXI01000004
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
36982
37057
+
Thr
CGT
[ENA]
¡û
>W2010310090
CABWLU010000012
Actinomycetota
Plantibacter sp. T3 [CABWLU]
89610
89535
-
Thr
CGT
[ENA]
¡û
>W2010471617
JAAGWY010000003
Actinomycetota
Diaminobutyricibacter tongyongensis NBRC 108724 [JAAGWY]
45283
45357
+
Thr
CGT
[ENA]
¡û
>W2010472197
JAAHFD010000001
Actinomycetota
Diaminobutyricimonas sp. TR449 [JAAHFD]
178005
177930
-
Thr
CGT
[ENA]
¡û
>W2010473343
JAAIJT010000008
Actinomycetota
Salinibacterium sp. ZJ450 [JAAIJT]
245612
245537
-
Thr
CGT
[ENA]
¡û
>W2010473372
JAAIJU010000007
Actinomycetota
Salinibacterium sp. ZJ454 [JAAIJU]
109791
109866
+
Thr
CGT
[ENA]
¡û
>W2010598852
JABFMV010000001
Actinomycetota
Leifsonia sp. C5G2 [JABFMV]
157666
157591
-
Thr
CGT
[ENA]
¡û
>W2010670907
JACCBJ010000001
Actinomycetota
Leifsonia soli DSM 23871 [JACCBJ]
59077
59152
+
Thr
CGT
[ENA]
¡û
>W2010672206
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
2901720
2901645
-
Thr
CGT
[ENA]
¡û
>W2010674654
JACCFL010000001
Actinomycetota
Leifsonia shinshuensis DSM 15165 [JACCFL]
3564225
3564151
-
Thr
CGT
[ENA]
¡û
>W2010676098
JACCHJ010000001
Actinomycetota
Leifsonia naganoensis DSM 15166 [JACCHJ]
771685
771610
-
Thr
CGT
[ENA]
¡û
>W2010714054
JACHVP010000001
Actinomycetota
Leifsonia aquatica DSM 20146 [JACHVP]
62511
62586
+
Thr
CGT
[ENA]
¡û
>W2011249981
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
804335
804260
-
Thr
CGT
[ENA]
¡û
>W2011373263
RBIC01000014
Actinomycetota
Plantibacter sp. YR521 [RBIC]
216344
216419
+
Thr
CGT
[ENA]
¡û
>W2011392649
RCCO01000001
Actinomycetota
Leifsonia sp. M321 24_2 [RCCO]
482106
482181
+
Thr
CGT
[ENA]
¡û
>W2011447540
RKHL01000001
Actinomycetota
Plantibacter flavus DSM 14012 [RKHL]
2891451
2891376
-
Thr
CGT
[ENA]
¡û
>W2011650136
SNYB01000001
Actinomycetota
Leifsonia sp. 115AMFTsu3.1 [SNYB]
1058310
1058385
+
Thr
CGT
[ENA]
¡û
>W2012093655
VMSF01000001
Actinomycetota
Leifsonia sp. AG29 [VMSF]
683816
683890
+
Thr
CGT
[ENA]
¡û
>W2110068900
BPER01000006
Actinomycetota
Leifsonia sp. LS1 [BPER]
271198
271272
+
Thr
CGT
[ENA]
¡û
>W2110288811
JACYNV010000002
Actinomycetota
Plantibacter sp. CFBP 8775 CFBP8775 [JACYNV]
808184
808109
-
Thr
CGT
[ENA]
¡û
>W2110290004
JACYTS010000003
Actinomycetota
Plantibacter sp. CFBP 8798 CFBP8798 [JACYTS]
317586
317511
-
Thr
CGT
[ENA]
¡û
>W2110290091
JACYTU010000008
Actinomycetota
Plantibacter sp. CFBP 8804 CFBP8804 [JACYTU]
32384
32309
-
Thr
CGT
[ENA]
¡û
>W2110290160
JACYTW010000010
Actinomycetota
Plantibacter sp. CFBP 13570 CFBP13570 [JACYTW]
8145
8220
+
Thr
CGT
[ENA]
¡û
>W2110329792
JADKSI010000003
Actinomycetota
Plantibacter sp. VKM Ac-2876 [JADKSI]
767612
767687
+
Thr
CGT
[ENA]
¡û
>W2110329841
JADKSJ010000002
Actinomycetota
Plantibacter sp. VKM Ac-2880 [JADKSJ]
631158
631083
-
Thr
CGT
[ENA]
¡û
>W2110329886
JADKSK010000002
Actinomycetota
Plantibacter sp. VKM Ac-2885 [JADKSK]
806049
806124
+
Thr
CGT
[ENA]
¡û
>W2110459148
JAFBCQ010000001
Actinomycetota
Microbacterium aurum DSM 8600 [JAFBCQ]
1489588
1489663
+
Thr
CGT
[ENA]
¡û
>W2110522624
JAGEKP010000002
Actinomycetota
Leifsonia sp. TF02-11 [JAGEKP]
128463
128538
+
Thr
CGT
[ENA]
¡û
>W2110680548
JAIHLP010000002
Actinomycetota
Leifsonia poae BS71 [JAIHLP]
3288692
3288766
+
Thr
CGT
[ENA]
¡û
>C211060412
CP043641
Actinomycetota
Leifsonia shinshuensis INR9 [CP043641]
1771561
1771486
-
Thr
CGT
-
¡û
>C211153108
CP061771
Actinomycetota
Salinibacterium sp. ZJ450 [CP061771]
343961
344036
+
Thr
CGT
-
¡û
>C211199432
CP065037
Actinomycetota
Leifsonia sp. ZF2019 [CP065037]
1062360
1062434
+
Thr
CGT
-
¡û
>C241111767
CP046619
Actinomycetota
Diaminobutyricimonas sp. LJ205 [CP046619]
372952
373027
+
Thr
CGT
-
¡û
>C241148449
CP051154
Actinomycetota
Leifsonia sp. PS1209 [CP051154]
956873
956948
+
Thr
CGT
-
¡û
>W2310022027
BSEN01000011
Actinomycetota
Leifsonia poae VKM Ac-1401 [BSEN]
34451
34377
-
Thr
CGT
[ENA]
¡û
>C161076860
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
3062787
3062862
+
Thr
CGT
[Ensembl]
¡û
>W1610730112
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
742023
742098
+
Thr
CGT
[ENA]
¡û
>W1610732010
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
19260
19185
-
Thr
CGT
[ENA]
¡û
>W1610737388
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
500702
500777
+
Thr
CGT
[ENA]
¡û
>W1610738501
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
433499
433574
+
Thr
CGT
[ENA]
¡û
>W1610738526
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
19222
19147
-
Thr
CGT
[ENA]
¡û
>W1610981903
LWCT01000007
Actinomycetota
Plantibacter sp. H53 [LWCT]
21007
21082
+
Thr
CGT
[ENA]
¡û
>W1710540806
FNXD01000013
Actinomycetota
Leifsonia sp. CL154 [FNXD]
83664
83739
+
Thr
CGT
[ENA]
¡û
>W1710568282
FOTM01000013
Actinomycetota
Leifsonia sp. CL147 [FOTM]
30040
29965
-
Thr
CGT
[ENA]
¡û
>W1710603981
FUZO01000002
Actinomycetota
Plantibacter cousiniae [FUZO]
739901
739976
+
Thr
CGT
[ENA]
¡û
>W1710608089
FXAP01000004
Actinomycetota
Plantibacter flavus [FXAP]
184153
184078
-
Thr
CGT
[ENA]
¡û
>W1710609365
FXWJ01000005
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
513017
513092
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK