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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51241 (19 seq.)
>WENV180038695
LLBY010002258
[LLBY] soil metagenome; soil from tomato rhizosphere
225536
225451
-
Leu
GAG
[ENA]
¡û
>WENV180040656
LLBZ010004913
[LLBZ] soil metagenome; soil from tomato rhizosphere
52544
52629
+
Leu
GAG
[ENA]
¡û
>C191023107
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
3326685
3326600
-
Leu
GAG
-
¡û
>C151018425
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
3179811
3179896
+
Leu
GAG
[Ensembl]
¡û
>W2010092980
BJKB01000009
Bacteroidota
Gelidibacter sp. Bio7-1 [BJKB]
47198
47113
-
Leu
GAG
[ENA]
¡û
>W2011421253
RHLN01000153
Bacteroidota
Lutibacter sp. HS1-25 [RHLN]
46537
46622
+
Leu
GAG
[ENA]
¡û
>W2011618955
SLUP01000004
Bacteroidota
Mariniflexile fucanivorans DSM 18792 [SLUP]
235665
235580
-
Leu
GAG
[ENA]
¡û
>W2011655575
SOBW01000009
Bacteroidota
Gelidibacter sediminis DSM 28135 [SOBW]
157444
157359
-
Leu
GAG
[ENA]
¡û
>W2012107568
VORX01000011
Bacteroidota
Gelidibacter salicanalis IC162 [VORX]
40275
40360
+
Leu
GAG
[ENA]
¡û
>W2012426092
WRPN01000004
Bacteroidota
Mariniflexile sp. M5A1M [WRPN]
20302
20217
-
Leu
GAG
[ENA]
¡û
>W2110033311
BMNR01000004
Bacteroidota
Yeosuana aromativorans JCM 12862 [BMNR]
18776
18861
+
Leu
GAG
[ENA]
¡û
>W2110277269
JACVXB010000003
Bacteroidota
Aestuariibaculum sediminum TT11 [JACVXB]
15196
15281
+
Leu
GAG
[ENA]
¡û
>W2110277310
JACVXC010000001
Bacteroidota
Aestuariibaculum suncheonense SC17 [JACVXC]
1386553
1386468
-
Leu
GAG
[ENA]
¡û
>W2110277361
JACVXD010000003
Bacteroidota
Aestuariibaculum marinum IP7 [JACVXD]
316205
316120
-
Leu
GAG
[ENA]
¡û
>W2110412983
JAEHJZ010000017
Bacteroidota
Gelidibacter salicanalis PAMC21136 [JAEHJZ]
4657
4742
+
Leu
GAG
[ENA]
¡û
>W2110556623
JAGJCB010000006
Bacteroidota
Mariniflexile gromovii KCTC 12570 [JAGJCB]
143833
143918
+
Leu
GAG
[ENA]
¡û
>C241306895
CP133090
Bacteroidota
Aestuariibaculum sp. YM273 [CP133090]
46651
46736
+
Leu
GAG
-
¡û
>C241329410
CP136709
Bacteroidota
Aestuariibaculum lutulentum L182 [CP136709]
51832
51917
+
Leu
GAG
-
¡û
>C161047074
CP012898
Bacteroidota
Pseudalgibacter alginicilyticus HZ22 [CP012898]
979462
979547
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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