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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512565 (135 seq.)
>WENV180126323
OASZ01002607
[OASZ] human gut metagenome; faeces
3347
3272
-
Ala
GGC
[ENA]
¡û
>WENV180162640
OAVH01000015
[OAVH] human gut metagenome; faeces
89296
89371
+
Ala
GGC
[ENA]
¡û
>WENV180170477
OAVV01000365
[OAVV] human gut metagenome; faeces
32203
32278
+
Ala
GGC
[ENA]
¡û
>WENV180178958
OAWJ01000143
[OAWJ] human gut metagenome; faeces
4576
4501
-
Ala
GGC
[ENA]
¡û
>WENV180182398
OAWO01021657
[OAWO] human gut metagenome; faeces
459
384
-
Ala
GGC
[ENA]
¡û
>WENV180407233
OBUQ01000769
[OBUQ] human gut metagenome; faeces
5520
5595
+
Ala
GGC
[ENA]
¡û
>WENV180413729
OBVC01000016
[OBVC] human gut metagenome; faeces
171622
171547
-
Ala
GGC
[ENA]
¡û
>WENV180434315
OBWL01000077
[OBWL] human gut metagenome; faeces
52176
52251
+
Ala
GGC
[ENA]
¡û
>WENV180440227
OBWV01000072
[OBWV] human gut metagenome; faeces
54600
54525
-
Ala
GGC
[ENA]
¡û
>WENV180462116
OBYB01000191
[OBYB] human gut metagenome; faeces
14282
14207
-
Ala
GGC
[ENA]
¡û
>WENV180471570
OBYP01000810
[OBYP] human gut metagenome; faeces
18965
19040
+
Ala
GGC
[ENA]
¡û
>WENV180476818
OBYZ01000009
[OBYZ] human gut metagenome; faeces
107824
107899
+
Ala
GGC
[ENA]
¡û
>WENV180490877
OBZV01000016
[OBZV] human gut metagenome; faeces
10452
10377
-
Ala
GGC
[ENA]
¡û
>WENV180508290
OCAT01068892
[OCAT] human gut metagenome; faeces
114
39
-
Ala
GGC
[ENA]
¡û
>WENV180618613
OCQB01000287
[OCQB] human gut metagenome; human gut
28276
28351
+
Ala
GGC
[ENA]
¡û
>WENV180730490
ODGV01006738
[ODGV] human metagenome; G_DNA_Stool
104
29
-
Ala
GGC
[ENA]
¡û
>WENV180742382
ODHH01004774
[ODHH] human metagenome; G_DNA_Stool
264
339
+
Ala
GGC
[ENA]
¡û
>WENV180812147
ODJN01004678
[ODJN] human metagenome; G_DNA_Stool
134
209
+
Ala
GGC
[ENA]
¡û
>WENV180956872
ODUK01004944
[ODUK] human metagenome; G_DNA_Stool
897
972
+
Ala
GGC
[ENA]
¡û
>WENV180963687
ODUN01348672
[ODUN] human metagenome; G_DNA_Stool
29
104
+
Ala
GGC
[ENA]
¡û
>WENV180997338
ODVS01013097
[ODVS] human metagenome; G_DNA_Stool
1539
1464
-
Ala
GGC
[ENA]
¡û
>WENV181035950
ODXP01000077
[ODXP] human metagenome; G_DNA_Stool
11246
11321
+
Ala
GGC
[ENA]
¡û
>WENV181116875
OEFH01000011
[OEFH] human metagenome; G_DNA_Stool
232529
232454
-
Ala
GGC
[ENA]
¡û
>WENV181219438
OFCP01000001
[OFCP] metagenome; Human gut stool
89276
89351
+
Ala
GGC
[ENA]
¡û
>WENV181221324
OFCU01002793
[OFCU] metagenome; Human gut stool
111
186
+
Ala
GGC
[ENA]
¡û
>WENV181331308
OFLZ01001679
[OFLZ] human gut metagenome; human gut
5242
5317
+
Ala
GGC
[ENA]
¡û
>WENV181442198
OGDN01084151
[OGDN] human gut metagenome; human gut
314
389
+
Ala
GGC
[ENA]
¡û
>WENV181444366
OGDR01000007
[OGDR] metagenome; Human gut stool
117851
117926
+
Ala
GGC
[ENA]
¡û
>WENV181463848
OGEP01000002
[OGEP] metagenome; Human gut stool
172824
172749
-
Ala
GGC
[ENA]
¡û
>WENV181603293
OGLI01000004
[OGLI] metagenome; Human gut stool
118005
118080
+
Ala
GGC
[ENA]
¡û
>WENV181663804
OGOI01000040
[OGOI] human gut metagenome; faeces
102940
102865
-
Ala
GGC
[ENA]
¡û
>WENV181692615
OGPA01000467
[OGPA] human gut metagenome; faeces
32230
32305
+
Ala
GGC
[ENA]
¡û
>WENV181715673
OGPS01000467
[OGPS] human gut metagenome; faeces
9024
8949
-
Ala
GGC
[ENA]
¡û
>WENV181732006
OGQD01007896
[OGQD] human gut metagenome; faeces
255
330
+
Ala
GGC
[ENA]
¡û
>WENV181741714
OGQK01001345
[OGQK] human gut metagenome; faeces
7451
7376
-
Ala
GGC
[ENA]
¡û
>WENV181782690
OGRK01053599
[OGRK] human gut metagenome; faeces
336
261
-
Ala
GGC
[ENA]
¡û
>WENV181824168
OGUK01000286
[OGUK] human gut metagenome; faeces
37271
37346
+
Ala
GGC
[ENA]
¡û
>WENV181827364
OGUM01001976
[OGUM] human gut metagenome; faeces
3413
3488
+
Ala
GGC
[ENA]
¡û
>WENV181878777
OGXE01009077
[OGXE] human gut metagenome; faeces
2672
2747
+
Ala
GGC
[ENA]
¡û
>WENV181889194
OGXN01000010
[OGXN] human gut metagenome; faeces
72872
72947
+
Ala
GGC
[ENA]
¡û
>WENV181897255
OGXT01000026
[OGXT] human gut metagenome; faeces
162318
162243
-
Ala
GGC
[ENA]
¡û
>WENV181899617
OGXU01009984
[OGXU] human gut metagenome; faeces
2051
1976
-
Ala
GGC
[ENA]
¡û
>WENV181919692
OGYI01002046
[OGYI] human gut metagenome; faeces
6196
6121
-
Ala
GGC
[ENA]
¡û
>WENV181925020
OGYM01000057
[OGYM] human gut metagenome; faeces
32960
32885
-
Ala
GGC
[ENA]
¡û
>WENV181938038
OGYW01002396
[OGYW] human gut metagenome; faeces
8376
8451
+
Ala
GGC
[ENA]
¡û
>WENV181940549
OGYY01000013
[OGYY] human gut metagenome; faeces
9380
9455
+
Ala
GGC
[ENA]
¡û
>WENV182025900
OHCJ01020762
[OHCJ] human gut metagenome; feces
348
423
+
Ala
GGC
[ENA]
¡û
>WENV182026282
OHCK01002898
[OHCK] human gut metagenome; feces
3163
3088
-
Ala
GGC
[ENA]
¡û
>WENV182031628
OHCT01000010
[OHCT] human gut metagenome; feces
171534
171459
-
Ala
GGC
[ENA]
¡û
>WENV182034226
OHCY01000012
[OHCY] human gut metagenome; feces
171534
171459
-
Ala
GGC
[ENA]
¡û
>WENV182041984
OHDN01000367
[OHDN] human gut metagenome; feces
27497
27572
+
Ala
GGC
[ENA]
¡û
>WENV182052451
OHEH01002938
[OHEH] human gut metagenome; feces
524
599
+
Ala
GGC
[ENA]
¡û
>WENV182106096
OHII01000012
[OHII] human gut metagenome; feces
32230
32305
+
Ala
GGC
[ENA]
¡û
>WENV182112309
OHIU01003167
[OHIU] human gut metagenome; feces
2311
2236
-
Ala
GGC
[ENA]
¡û
>WENV182135578
OHKJ01000542
[OHKJ] human gut metagenome; feces
8947
9022
+
Ala
GGC
[ENA]
¡û
>WENV182137528
OHKL01002973
[OHKL] human gut metagenome; feces
1387
1462
+
Ala
GGC
[ENA]
¡û
>WENV182149067
OHLF01039282
[OHLF] human gut metagenome; feces
342
417
+
Ala
GGC
[ENA]
¡û
>WENV182166223
OHMP01002017
[OHMP] human gut metagenome; feces
3242
3167
-
Ala
GGC
[ENA]
¡û
>WENV182196680
OHPG01000008
[OHPG] human gut metagenome; feces
171534
171459
-
Ala
GGC
[ENA]
¡û
>WENV182200728
OHPL01003422
[OHPL] human gut metagenome; feces
4678
4603
-
Ala
GGC
[ENA]
¡û
>WENV182208072
OHPX01000440
[OHPX] human gut metagenome; feces
5091
5016
-
Ala
GGC
[ENA]
¡û
>WENV182211621
OHQF01001854
[OHQF] human gut metagenome; feces
1190
1265
+
Ala
GGC
[ENA]
¡û
>WENV182238996
OHSA01001025
[OHSA] human gut metagenome; feces
6123
6198
+
Ala
GGC
[ENA]
¡û
>WENV182238997
OHSA01001025
[OHSA] human gut metagenome; feces
2990
2915
-
Ala
GGC
[ENA]
¡û
>WENV182248909
OHSP01002094
[OHSP] human gut metagenome; feces
748
823
+
Ala
GGC
[ENA]
¡û
>WENV182395844
OIEL01007054
[OIEL] human gut metagenome; human gut
3368
3293
-
Ala
GGC
[ENA]
¡û
>WENV182517838
OIWP01000001
[OIWP] human gut metagenome; faeces
249627
249702
+
Ala
GGC
[ENA]
¡û
>WENV182715020
OJPI01000086
[OJPI] human gut metagenome; stool sample
38457
38532
+
Ala
GGC
[ENA]
¡û
>WENV182752736
OJRC01000001
[OJRC] human gut metagenome; stool sample
215830
215905
+
Ala
GGC
[ENA]
¡û
>WENV182883008
OKSB01003059
[OKSB] human gut metagenome; faeces
7658
7583
-
Ala
GGC
[ENA]
¡û
>WENV182890773
OKSG01003792
[OKSG] human gut metagenome; feces
786
861
+
Ala
GGC
[ENA]
¡û
>WENV182894271
OKSL01000883
[OKSL] human gut metagenome; feces
10603
10678
+
Ala
GGC
[ENA]
¡û
>WENV182911894
OKTL01011752
[OKTL] human gut metagenome; feces
57
132
+
Ala
GGC
[ENA]
¡û
>WENV182919131
OKTX01001125
[OKTX] human gut metagenome; feces
5253
5328
+
Ala
GGC
[ENA]
¡û
>WENV183024059
OLFT01000009
[OLFT] human gut metagenome; faeces
32229
32304
+
Ala
GGC
[ENA]
¡û
>WENV183030281
OLFX01000020
[OLFX] human gut metagenome; faeces
32220
32295
+
Ala
GGC
[ENA]
¡û
>WENV183046303
OLGF01000002
[OLGF] human gut metagenome; faeces
232533
232458
-
Ala
GGC
[ENA]
¡û
>WENV183049563
OLGH01009667
[OLGH] human gut metagenome; faeces
852
927
+
Ala
GGC
[ENA]
¡û
>WENV183061959
OLIC01002047
[OLIC] metagenome; faeces
349
424
+
Ala
GGC
[ENA]
¡û
>WENV183062845
OLIF01000027
[OLIF] metagenome; faeces
49046
48971
-
Ala
GGC
[ENA]
¡û
>WENV183109866
OLNN01030200
[OLNN] human gut metagenome; faeces
1163
1238
+
Ala
GGC
[ENA]
¡û
>WENV183189894
OLPQ01018477
[OLPQ] human gut metagenome; faeces
865
940
+
Ala
GGC
[ENA]
¡û
>WENV183215936
OLQH01000006
[OLQH] human gut metagenome; faeces
71041
71116
+
Ala
GGC
[ENA]
¡û
>WENV183231754
OLQU01000634
[OLQU] human gut metagenome; faeces
26938
26863
-
Ala
GGC
[ENA]
¡û
>WENV183273839
OLRY01000004
[OLRY] human gut metagenome; faeces
118947
119022
+
Ala
GGC
[ENA]
¡û
>WENV183296546
OLSM01000011
[OLSM] human gut metagenome; faeces
32237
32312
+
Ala
GGC
[ENA]
¡û
>WENV183313533
OLVR01000026
[OLVR] human gut metagenome; faeces
32203
32278
+
Ala
GGC
[ENA]
¡û
>WENV183347651
OLWT01022161
[OLWT] human gut metagenome; feces
1209
1284
+
Ala
GGC
[ENA]
¡û
>WENV183352288
OLWZ01011458
[OLWZ] human gut metagenome; feces
418
493
+
Ala
GGC
[ENA]
¡û
>WENV183362449
OLXK01007911
[OLXK] human gut metagenome; feces
3580
3505
-
Ala
GGC
[ENA]
¡û
>WENV183365448
OLXN01009072
[OLXN] human gut metagenome; feces
2316
2241
-
Ala
GGC
[ENA]
¡û
>WENV183372659
OLXX01000002
[OLXX] human gut metagenome; feces
165409
165334
-
Ala
GGC
[ENA]
¡û
>WENV183385464
OLYP01000083
[OLYP] human gut metagenome; feces
3808
3883
+
Ala
GGC
[ENA]
¡û
>WENV183397628
OLZL01000538
[OLZL] human gut metagenome; feces
352
427
+
Ala
GGC
[ENA]
¡û
>WENV183398097
OLZO01000002
[OLZO] human gut metagenome; feces
165409
165334
-
Ala
GGC
[ENA]
¡û
>WENV183400753
OLZS01000259
[OLZS] human gut metagenome; feces
1336
1261
-
Ala
GGC
[ENA]
¡û
>WENV183463281
OMDY01000002
[OMDY] human gut metagenome; feces
165409
165334
-
Ala
GGC
[ENA]
¡û
>WENV183493132
OMGI01008283
[OMGI] human gut metagenome; human gut
1071
996
-
Ala
GGC
[ENA]
¡û
>WENV183562012
OOBV01017870
[OOBV] human gut metagenome; human gut
619
694
+
Ala
GGC
[ENA]
¡û
>WENV183634195
OOIG01011753
[OOIG] human gut metagenome; human gut
1750
1675
-
Ala
GGC
[ENA]
¡û
>WENV183764298
PPYE01319626
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
108226
108151
-
Ala
GGC
[ENA]
¡û
>WENV183771656
PPYF01000011
[PPYF] human gut metagenome; stool from patient with Crohn's disease
273674
273749
+
Ala
GGC
[ENA]
¡û
>WENV170026411
CDTW01039252
[CDTW] gut metagenome; human stools
50847
50922
+
Ala
GGC
[ENA]
¡û
>WENV170053708
CDZD01040366
[CDZD] gut metagenome; human stools
123439
123514
+
Ala
GGC
[ENA]
¡û
>WENV170055834
CDZF01022912
[CDZF] gut metagenome; human stools
1451
1526
+
Ala
GGC
[ENA]
¡û
>W1810169411
PJKA01000002
Verrucomicrobiota
Akkermansia muciniphila GP24 [PJKA]
226116
226041
-
Ala
GGC
[ENA]
¡û
>W1810169477
PJKB01000001
Verrucomicrobiota
Akkermansia muciniphila GP22 [PJKB]
693596
693521
-
Ala
GGC
[ENA]
¡û
>W1810169534
PJKC01000001
Verrucomicrobiota
Akkermansia muciniphila GP42 [PJKC]
549340
549265
-
Ala
GGC
[ENA]
¡û
>W1810169602
PJKD01000015
Verrucomicrobiota
Akkermansia muciniphila GP30 [PJKD]
8191
8266
+
Ala
GGC
[ENA]
¡û
>W1810169608
PJKE01000001
Verrucomicrobiota
Akkermansia muciniphila GP25 [PJKE]
734207
734282
+
Ala
GGC
[ENA]
¡û
>W1810169653
PJKF01000001
Verrucomicrobiota
Akkermansia muciniphila GP15 [PJKF]
132826
132901
+
Ala
GGC
[ENA]
¡û
>W1810169731
PJKG01000005
Verrucomicrobiota
Akkermansia muciniphila GP12 [PJKG]
311900
311825
-
Ala
GGC
[ENA]
¡û
>W1810169783
PJKH01000009
Verrucomicrobiota
Akkermansia muciniphila GP11 [PJKH]
20115
20040
-
Ala
GGC
[ENA]
¡û
>W1810169827
PJKI01000017
Verrucomicrobiota
Akkermansia muciniphila GP10 [PJKI]
1799
1874
+
Ala
GGC
[ENA]
¡û
>W1810169859
PJKJ01000001
Verrucomicrobiota
Akkermansia muciniphila GP08 [PJKJ]
498044
497969
-
Ala
GGC
[ENA]
¡û
>W1810169935
PJKK01000015
Verrucomicrobiota
Akkermansia muciniphila GP07 [PJKK]
956058
956133
+
Ala
GGC
[ENA]
¡û
>W1810169965
PJKL01000003
Verrucomicrobiota
Akkermansia muciniphila BSH05 [PJKL]
183147
183072
-
Ala
GGC
[ENA]
¡û
>W1810169998
PJKM01000002
Verrucomicrobiota
Akkermansia muciniphila BSH01 [PJKM]
140298
140373
+
Ala
GGC
[ENA]
¡û
>W2010285686
CABMLH010000015
Verrucomicrobiota
Akkermansia muciniphila [CABMLH]
956058
956133
+
Ala
GGC
[ENA]
¡û
>W2010285833
CABMLK010000001
Verrucomicrobiota
Akkermansia muciniphila [CABMLK]
693596
693521
-
Ala
GGC
[ENA]
¡û
>W2110177500
JABFCI010000002
Verrucomicrobiota
Akkermansia sp. GGCC_0220 [JABFCI]
117786
117861
+
Ala
GGC
[ENA]
¡û
>C211035374
CP029701
Verrucomicrobiota
Akkermansia muciniphila EB-AMDK-40 [CP029701]
2680551
2680626
+
Ala
GGC
-
¡û
>C211035427
CP029702
Verrucomicrobiota
Akkermansia muciniphila EB-AMDK-41 [CP029702]
2680484
2680559
+
Ala
GGC
-
¡û
>C211035692
CP029753
Verrucomicrobiota
Akkermansia muciniphila EB-AMDK-39 [CP029753]
2680615
2680690
+
Ala
GGC
-
¡û
>C211299155
CP072017
Verrucomicrobiota
Akkermansia muciniphila AkkB40 [CP072017]
2689222
2689297
+
Ala
GGC
-
¡û
>C211299262
CP072019
Verrucomicrobiota
Akkermansia muciniphila Akk2680 [CP072019]
2692356
2692431
+
Ala
GGC
-
¡û
>C211299368
CP072021
Verrucomicrobiota
Akkermansia muciniphila Akk2196 [CP072021]
2686055
2686130
+
Ala
GGC
-
¡û
>C211299421
CP072022
Verrucomicrobiota
Akkermansia muciniphila Akk2190 [CP072022]
2686086
2686161
+
Ala
GGC
-
¡û
>C211299582
CP072025
Verrucomicrobiota
Akkermansia muciniphila Akk2000 [CP072025]
2686094
2686169
+
Ala
GGC
-
¡û
>C211299689
CP072027
Verrucomicrobiota
Akkermansia muciniphila Akk1863 [CP072027]
2800723
2800798
+
Ala
GGC
-
¡û
>C211300168
CP072036
Verrucomicrobiota
Akkermansia muciniphila Akk1573 [CP072036]
2615715
2615790
+
Ala
GGC
-
¡û
>C211300273
CP072038
Verrucomicrobiota
Akkermansia muciniphila Akk1476 [CP072038]
2686057
2686132
+
Ala
GGC
-
¡û
>C211300591
CP072044
Verrucomicrobiota
Akkermansia muciniphila Akk0580 [CP072044]
2650342
2650417
+
Ala
GGC
-
¡û
>W2310017622
BQOH01000001
Verrucomicrobiota
Akkermansia muciniphila CE91-St26 [BQOH]
2658795
2658870
+
Ala
GGC
[ENA]
¡û
>W2310027537
BSQU01000001
Verrucomicrobiota
Akkermansia sp. NBRC 115031 [BSQU]
527395
527470
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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