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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512589 (71 seq.)
>W1710860266
LMCT01000003
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
60521
60594
+
Ala
TGC
[ENA]
¡û
>W1710866974
LMHX01000031
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
58937
59010
+
Ala
TGC
[ENA]
¡û
>W1711183453
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
255313
255386
+
Ala
TGC
[ENA]
¡û
>WENV180023330
FTHV01000258
[FTHV] metagenome; soil
1524
1451
-
Ala
TGC
[ENA]
¡û
>WENV180023460
FTHY01000255
[FTHY] metagenome; soil
1524
1451
-
Ala
TGC
[ENA]
¡û
>WENV180024706
FTIJ01000321
[FTIJ] metagenome; soil
4800
4873
+
Ala
TGC
[ENA]
¡û
>WENV180033141
FTKF01000324
[FTKF] metagenome; soil
2250
2323
+
Ala
TGC
[ENA]
¡û
>WENV180033644
FTKL01001019
[FTKL] metagenome; soil
25880
25953
+
Ala
TGC
[ENA]
¡û
>WENV180035038
FTKT01000343
[FTKT] metagenome; soil
57907
57834
-
Ala
TGC
[ENA]
¡û
>WENV180363853
OBNZ01012972
[OBNZ] marine metagenome; ENVO:00002010
501
428
-
Ala
TGC
[ENA]
¡û
>WENV181126237
OEFV01024374
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
444
517
+
Ala
TGC
[ENA]
¡û
>WENV181325342
OFLI01046844
[OFLI] seawater metagenome; seawater
311
384
+
Ala
TGC
[ENA]
¡û
>WENV181385787
OFRK01003522
[OFRK] marine metagenome; sea ice
635
708
+
Ala
TGC
[ENA]
¡û
>W141282685
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
637833
637906
+
Ala
TGC
[ENA]
¡û
>WENV183618786
OOFO01048174
[OOFO] marine metagenome; seawater
312
385
+
Ala
TGC
[ENA]
¡û
>WENV183629986
OOGR01002143
[OOGR] marine metagenome; seawater
76
3
-
Ala
TGC
[ENA]
¡û
>WENV183631244
OOGU01058185
[OOGU] marine metagenome; sea ice
124
51
-
Ala
TGC
[ENA]
¡û
>WENV170565606
FJVZ01000948
[FJVZ] metagenome; soil
7909
7836
-
Ala
TGC
[ENA]
¡û
>WENV170569926
FLMP01355562
[FLMP] seawater metagenome; seawater
136
211
+
Ala
TGC
[ENA]
¡û
>WENV170572065
FLOH01000508
[FLOH] marine metagenome; water
16949
17024
+
Ala
TGC
[ENA]
¡û
>WENV170572300
FLOH01000713
[FLOH] marine metagenome; water
62290
62215
-
Ala
TGC
[ENA]
¡û
>WENV170598874
FUWD010052828
[FUWD] metagenome; unknown
84
159
+
Ala
TGC
[ENA]
¡û
>WENV170616332
FUWD012885251
[FUWD] metagenome; unknown
851
924
+
Ala
TGC
[ENA]
¡û
>WENV170626706
FUWD013228993
[FUWD] metagenome; unknown
13230
13155
-
Ala
TGC
[ENA]
¡û
>WENV170627310
FUWD013232585
[FUWD] metagenome; unknown
1124
1197
+
Ala
TGC
[ENA]
¡û
>WENV170952143
MEHZ011585336
[MEHZ] marine metagenome; marine surface water
12
87
+
Ala
TGC
[ENA]
¡û
>WENV170952957
MEHZ011622381
[MEHZ] marine metagenome; marine surface water
73
1
-
Ala
TGC
[ENA]
¡û
>WENV170952986
MEHZ011623945
[MEHZ] marine metagenome; marine surface water
74
1
-
Ala
TGC
[ENA]
¡û
>WENV170953062
MEHZ011626781
[MEHZ] marine metagenome; marine surface water
21
96
+
Ala
TGC
[ENA]
¡û
>C181116293
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
4425602
4425675
+
Ala
TGC
-
¡û
>W141761573
JOAV01000800
Actinomycetota
Streptomyces sp. NRRL S-50 [JOAV]
1144
1071
-
Ala
TGC
[ENA]
¡û
>W141761940
JOBB01007458
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
827
900
+
Ala
TGC
[ENA]
¡û
>W141765001
JODB01003860
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
689
762
+
Ala
TGC
[ENA]
¡û
>W141766001
JODS01000003
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
210618
210545
-
Ala
TGC
[ENA]
¡û
>W141770046
JOGF01001623
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
668
741
+
Ala
TGC
[ENA]
¡û
>W141771132
JOGY01001119
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
2079
2006
-
Ala
TGC
[ENA]
¡û
>W141771953
JOHN01000019
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
48193
48266
+
Ala
TGC
[ENA]
¡û
>W141818503
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1406055
1405982
-
Ala
TGC
[ENA]
¡û
>W141820002
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2641655
2641582
-
Ala
TGC
[ENA]
¡û
>W1810173046
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
3449699
3449626
-
Ala
TGC
[ENA]
¡û
>W1810394672
PYBW01000013
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
97928
98001
+
Ala
TGC
[ENA]
¡û
>SRA1019143
SRR035082.410020
454 Sequencing (SRP001803)
33
108
+
Ala
TGC
[SRA]
>SRA1023164
SRR035084.24738
454 Sequencing (SRP001805)
110
183
+
Ala
TGC
[SRA]
>W2010705624
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
3891918
3891991
+
Ala
TGC
[ENA]
¡û
>W2010705890
JACHJV010000001
Actinomycetota
Kitasatospora kifunensis DSM 41654 [JACHJV]
3988743
3988670
-
Ala
TGC
[ENA]
¡û
>SRA1043830
SRR035092.181569
454 Sequencing (SRP001813)
172
97
-
Ala
TGC
[SRA]
>W2011491067
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
2148817
2148744
-
Ala
TGC
[ENA]
¡û
>SRA1046466
SRR035093.314483
454 Sequencing (SRP001814)
205
278
+
Ala
TGC
[SRA]
>W2012038138
VIGB01000003
Actinomycetota
Kitasatospora sp. MMS16-CNU292 [VIGB]
4480343
4480270
-
Ala
TGC
[ENA]
¡û
>W2012047333
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3951806
3951879
+
Ala
TGC
[ENA]
¡û
>W2012047334
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3971681
3971754
+
Ala
TGC
[ENA]
¡û
>W2012047365
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3970969
3970896
-
Ala
TGC
[ENA]
¡û
>W2012048954
VIWT01000001
Actinomycetota
Kitasatospora viridis DSM 44826 [VIWT]
2918004
2917931
-
Ala
TGC
[ENA]
¡û
>W2110039405
BMSD01000002
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
259757
259684
-
Ala
TGC
[ENA]
¡û
>W2110053267
BNBO01000015
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
103289
103216
-
Ala
TGC
[ENA]
¡û
>W2110556246
JAGIYX010000025
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
24082
24155
+
Ala
TGC
[ENA]
¡û
>C241202534
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
4590711
4590784
+
Ala
TGC
-
¡û
>C241208694
CP108404
Actinomycetota
Kitasatospora sp. NBC_01302 [CP108404]
4821217
4821290
+
Ala
TGC
-
¡û
>C241209680
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
4394710
4394637
-
Ala
TGC
-
¡û
>C241209718
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
4637532
4637605
+
Ala
TGC
-
¡û
>C241210117
CP108476
Actinomycetota
Kitasatospora sp. NBC_01250 [CP108476]
4797059
4797132
+
Ala
TGC
-
¡û
>C241210220
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
5034735
5034662
-
Ala
TGC
-
¡û
>C241210258
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
4439687
4439760
+
Ala
TGC
-
¡û
>C241211706
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
5003510
5003437
-
Ala
TGC
-
¡û
>C241211776
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
4932964
4932891
-
Ala
TGC
-
¡û
>C241321825
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
4760986
4761059
+
Ala
TGC
-
¡û
>W1511555632
JZWY01000104
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
37240
37313
+
Ala
TGC
[ENA]
¡û
>W1511696763
LGDO01000001
Actinomycetota
Streptomyces sp. XY431 [LGDO]
31610
31537
-
Ala
TGC
[ENA]
¡û
>W1610722612
LMCT01000003
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
60521
60594
+
Ala
TGC
[ENA]
¡û
>W1610729320
LMHX01000031
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
58937
59010
+
Ala
TGC
[ENA]
¡û
>WENV000926
AACY020029126
Marine microbial communities from Global Ocean Sampling (GOS)
1663
1588
-
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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