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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512592 (33 seq.)
>W1710786976
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2347498
2347425
-
Asn
GTT
[ENA]
¡û
>W131163686
AQZX01000031
Actinomycetota
Sporichthya polymorpha DSM 43042 [AQZX]
1374957
1375030
+
Asn
GTT
[ENA]
¡û
>W1711183443
LWLA01000045
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
174069
173996
-
Asn
GTT
[ENA]
¡û
>WENV180023346
FTHV01000972
[FTHV] metagenome; soil
2978
2905
-
Asn
GTT
[ENA]
¡û
>WENV180023347
FTHV01000972
[FTHV] metagenome; soil
2845
2772
-
Asn
GTT
[ENA]
¡û
>WENV180023476
FTHY01000952
[FTHY] metagenome; soil
2978
2905
-
Asn
GTT
[ENA]
¡û
>WENV180023477
FTHY01000952
[FTHY] metagenome; soil
2845
2772
-
Asn
GTT
[ENA]
¡û
>WENV180024723
FTIJ01001116
[FTIJ] metagenome; soil
272
199
-
Asn
GTT
[ENA]
¡û
>WENV180024724
FTIJ01001116
[FTIJ] metagenome; soil
139
66
-
Asn
GTT
[ENA]
¡û
>WENV180033727
FTKL01056593
[FTKL] metagenome; soil
208
135
-
Asn
GTT
[ENA]
¡û
>WENV180033728
FTKL01056593
[FTKL] metagenome; soil
75
2
-
Asn
GTT
[ENA]
¡û
>WENV170565611
FJVZ01001072
[FJVZ] metagenome; soil
3273
3200
-
Asn
GTT
[ENA]
¡û
>WENV170565612
FJVZ01001072
[FJVZ] metagenome; soil
3140
3067
-
Asn
GTT
[ENA]
¡û
>W141757007
JNXO01000605
Actinomycetota
Kitasatospora misakiensis [JNXO]
315
242
-
Asn
GTT
[ENA]
¡û
>W141763691
JOCF01000012
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
108069
108142
+
Asn
GTT
[ENA]
¡û
>W141771976
JOHN01000048
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
32881
32954
+
Asn
GTT
[ENA]
¡û
>W1810173054
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
2808706
2808633
-
Asn
GTT
[ENA]
¡û
>W2011388464
RBWV01000012
Actinomycetota
Motilibacter peucedani RP-AC37 [RBWV]
234577
234651
+
Asn
GTT
[ENA]
¡û
>W2011491090
RSFG01000003
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
406668
406741
+
Asn
GTT
[ENA]
¡û
>W2012038114
VIGB01000003
Actinomycetota
Kitasatospora sp. MMS16-CNU292 [VIGB]
6116802
6116875
+
Asn
GTT
[ENA]
¡û
>W2012047381
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
2174204
2174131
-
Asn
GTT
[ENA]
¡û
>W2012048930
VIWT01000001
Actinomycetota
Kitasatospora viridis DSM 44826 [VIWT]
4477076
4477149
+
Asn
GTT
[ENA]
¡û
>W2012230678
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
1603716
1603643
-
Asn
GTT
[ENA]
¡û
>W2110039418
BMSD01000004
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
179993
179920
-
Asn
GTT
[ENA]
¡û
>W2110053236
BNBO01000005
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
60582
60509
-
Asn
GTT
[ENA]
¡û
>W2110556227
JAGIYX010000012
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
101260
101333
+
Asn
GTT
[ENA]
¡û
>W2110645354
JAHTKP010000002
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
50101
50174
+
Asn
GTT
[ENA]
¡û
>C241202576
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
2974386
2974313
-
Asn
GTT
-
¡û
>C241209768
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
3042330
3042257
-
Asn
GTT
-
¡û
>C241210199
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
6629946
6630019
+
Asn
GTT
-
¡û
>C241210301
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
2937753
2937680
-
Asn
GTT
-
¡û
>C241321868
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
3260630
3260557
-
Asn
GTT
-
¡û
>W1610650831
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2347498
2347425
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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