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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512790 (90 seq.)
>W1711502965
MKTE01000058
Bacteroidota
Bacteroidia bacterium 44-10 [MKTE]
39958
40031
+
Lys
CTT
[ENA]
¡û
>W1711578067
MNQK01000015
Bacteroidota
Bacteroidales bacterium 52_46 [MNQK]
13020
13095
+
Lys
CTT
[ENA]
¡û
>W1711629416
MPOX01000025
Bacteroidota
Proteiniphilum sp. EBM-41 [MPOX]
126930
127005
+
Lys
CTT
[ENA]
¡û
>C171129278
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
228233
228306
+
Lys
CTT
-
¡û
>WENV180230715
OBCM01000555
[OBCM] human gut metagenome; human gut
242
167
-
Lys
CTT
[ENA]
¡û
>WENV180339908
OBLI01009694
[OBLI] pig gut metagenome; faeces
89
14
-
Lys
CTT
[ENA]
¡û
>WENV180404652
OBSA01022280
[OBSA] human gut metagenome; ENVO:feces
312
387
+
Lys
CTT
[ENA]
¡û
>WENV180562575
OCLB01022840
[OCLB] human gut metagenome; human gut
360
285
-
Lys
CTT
[ENA]
¡û
>WENV180565662
OCLH01001613
[OCLH] human gut metagenome; human gut
357
282
-
Lys
CTT
[ENA]
¡û
>WENV180633034
OCQZ01050628
[OCQZ] human gut metagenome; human gut
369
294
-
Lys
CTT
[ENA]
¡û
>WENV181235372
OFEY01000214
[OFEY] mouse gut metagenome; faeces
50271
50196
-
Lys
CTT
[ENA]
¡û
>WENV181237556
OFFB01000506
[OFFB] mouse gut metagenome; faeces
13670
13745
+
Lys
CTT
[ENA]
¡û
>WENV181238446
OFFC01000380
[OFFC] mouse gut metagenome; faeces
13367
13442
+
Lys
CTT
[ENA]
¡û
>WENV181239540
OFFD01001509
[OFFD] mouse gut metagenome; faeces
268
193
-
Lys
CTT
[ENA]
¡û
>WENV181248216
OFFL01001247
[OFFL] mouse gut metagenome; faeces
6447
6372
-
Lys
CTT
[ENA]
¡û
>WENV181249307
OFFM01002726
[OFFM] mouse gut metagenome; faeces
7355
7430
+
Lys
CTT
[ENA]
¡û
>WENV181250254
OFFN01002028
[OFFN] mouse gut metagenome; faeces
7964
8039
+
Lys
CTT
[ENA]
¡û
>WENV181251200
OFFO01001374
[OFFO] mouse gut metagenome; faeces
13367
13442
+
Lys
CTT
[ENA]
¡û
>WENV181257588
OFFU01001749
[OFFU] mouse gut metagenome; faeces
13367
13442
+
Lys
CTT
[ENA]
¡û
>WENV181266991
OFGC01000557
[OFGC] mouse gut metagenome; faeces
13367
13442
+
Lys
CTT
[ENA]
¡û
>WENV181275239
OFGJ01000391
[OFGJ] mouse gut metagenome; faeces
13670
13745
+
Lys
CTT
[ENA]
¡û
>WENV181276351
OFGK01002401
[OFGK] mouse gut metagenome; faeces
7355
7430
+
Lys
CTT
[ENA]
¡û
>WENV181277350
OFGL01001474
[OFGL] mouse gut metagenome; faeces
268
193
-
Lys
CTT
[ENA]
¡û
>WENV181278172
OFGM01000298
[OFGM] mouse gut metagenome; faeces
13367
13442
+
Lys
CTT
[ENA]
¡û
>WENV181279237
OFGN01000243
[OFGN] mouse gut metagenome; faeces
14097
14172
+
Lys
CTT
[ENA]
¡û
>WENV181288817
OFGZ01001383
[OFGZ] mouse gut metagenome; faeces
9957
10032
+
Lys
CTT
[ENA]
¡û
>WENV181437159
OGDF01064452
[OGDF] human gut metagenome; human gut
95
20
-
Lys
CTT
[ENA]
¡û
>WENV181706696
OGPL01001747
[OGPL] human gut metagenome; faeces
18378
18453
+
Lys
CTT
[ENA]
¡û
>WENV182017018
OHBV01002063
[OHBV] human gut metagenome; feces
326
251
-
Lys
CTT
[ENA]
¡û
>WENV182035640
OHDA01002362
[OHDA] human gut metagenome; feces
326
251
-
Lys
CTT
[ENA]
¡û
>WENV182040352
OHDH01000476
[OHDH] human gut metagenome; feces
5963
6038
+
Lys
CTT
[ENA]
¡û
>WENV182063425
OHEX01000490
[OHEX] human gut metagenome; feces
13522
13447
-
Lys
CTT
[ENA]
¡û
>WENV182103130
OHHY01002057
[OHHY] human gut metagenome; feces
5963
6038
+
Lys
CTT
[ENA]
¡û
>WENV182155406
OHLQ01002252
[OHLQ] human gut metagenome; feces
326
251
-
Lys
CTT
[ENA]
¡û
>WENV182261697
OHTM01000469
[OHTM] human gut metagenome; feces
13522
13447
-
Lys
CTT
[ENA]
¡û
>WENV182289000
OHVU01004302
[OHVU] human gut metagenome; feces
425
500
+
Lys
CTT
[ENA]
¡û
>WENV182325881
OHYU01000620
[OHYU] human gut metagenome; feces
10247
10172
-
Lys
CTT
[ENA]
¡û
>WENV182331955
OHZJ01001100
[OHZJ] human gut metagenome; feces
314
239
-
Lys
CTT
[ENA]
¡û
>WENV182365030
OICI01002547
[OICI] human gut metagenome; feces
1516
1591
+
Lys
CTT
[ENA]
¡û
>WENV182375314
OIDC01011223
[OIDC] human gut metagenome; feces
1205
1280
+
Lys
CTT
[ENA]
¡û
>WENV182514422
OIWM01008669
[OIWM] human gut metagenome; faeces
4642
4717
+
Lys
CTT
[ENA]
¡û
>WENV182532589
OIXA01002880
[OIXA] human gut metagenome; faeces
8906
8831
-
Lys
CTT
[ENA]
¡û
>WENV182539511
OIXV01006278
[OIXV] human gut metagenome; faeces
1993
1918
-
Lys
CTT
[ENA]
¡û
>WENV182660724
OJMM01007135
[OJMM] human gut metagenome; feces
724
799
+
Lys
CTT
[ENA]
¡û
>WENV182663097
OJMO01002399
[OJMO] human gut metagenome; feces
4968
4893
-
Lys
CTT
[ENA]
¡û
>WENV182681357
OJNV01000820
[OJNV] human gut metagenome; human gut
266
191
-
Lys
CTT
[ENA]
¡û
>WENV182682566
OJNW01003003
[OJNW] human gut metagenome; human gut
5646
5721
+
Lys
CTT
[ENA]
¡û
>WENV182694447
OJOI01001005
[OJOI] human gut metagenome; human gut
396
321
-
Lys
CTT
[ENA]
¡û
>WENV182898395
OKSR01001993
[OKSR] human gut metagenome; feces
5963
6038
+
Lys
CTT
[ENA]
¡û
>WENV182925913
OKUL01004632
[OKUL] human gut metagenome; feces
2927
2852
-
Lys
CTT
[ENA]
¡û
>WENV182930367
OKUR01000244
[OKUR] human gut metagenome; feces
14993
14918
-
Lys
CTT
[ENA]
¡û
>WENV183283710
OLSD01001342
[OLSD] human gut metagenome; faeces
10530
10605
+
Lys
CTT
[ENA]
¡û
>WENV183316077
OLVS01004610
[OLVS] human gut metagenome; feces
2825
2750
-
Lys
CTT
[ENA]
¡û
>WENV183342232
OLWN01003996
[OLWN] human gut metagenome; feces
1142
1217
+
Lys
CTT
[ENA]
¡û
>WENV183646155
OQVR01000231
[OQVR] human gut metagenome; human gut
13614
13539
-
Lys
CTT
[ENA]
¡û
>WENV183649596
OQVT01003027
[OQVT] human gut metagenome; human gut
9606
9531
-
Lys
CTT
[ENA]
¡û
>WENV183652785
OQVZ01000096
[OQVZ] human gut metagenome; human gut
22890
22965
+
Lys
CTT
[ENA]
¡û
>WENV183654379
OQWA01030666
[OQWA] human gut metagenome; human gut
862
937
+
Lys
CTT
[ENA]
¡û
>WENV183656968
OQWI01001159
[OQWI] human gut metagenome; human gut
9784
9709
-
Lys
CTT
[ENA]
¡û
>WENV183658872
OQWM01007252
[OQWM] human gut metagenome; human gut
5442
5367
-
Lys
CTT
[ENA]
¡û
>WENV183746191
POVV01012978
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
325
398
+
Lys
CTT
[ENA]
¡û
>WENV170086800
CEAC01021582
[CEAC] gut metagenome; human stools
6197
6272
+
Lys
CTT
[ENA]
¡û
>WENV170562795
CZCB01005399
[CZCB] anaerobic digester metagenome; anaerobic digester
120
195
+
Lys
CTT
[ENA]
¡û
>WENV170656552
JTFO01024486
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
590
517
-
Lys
CTT
[ENA]
¡û
>WENV170658646
JTFP01170677
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
941
866
-
Lys
CTT
[ENA]
¡û
>WENV170690851
LFRM01365691
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
114
41
-
Lys
CTT
[ENA]
¡û
>WENV170968245
MTKW01007377
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14273
14346
+
Lys
CTT
[ENA]
¡û
>W1810192609
PKMK01000006
Bacteroidota
Dysgonamonadaceae bacterium XHS2771 [PKMK]
61566
61493
-
Lys
CTT
[ENA]
¡û
>W1810628388
QICL01000017
Bacteroidota
Dysgonomonas alginatilytica DSM 100214 [QICL]
104880
104953
+
Lys
CTT
[ENA]
¡û
>C151102970
LN515532
Bacteroidota
Fermentimonas caenicola [LN515532]
2072252
2072177
-
Lys
CTT
[Ensembl]
¡û
>W2010266104
CABKPQ020000005
Bacteroidota
Dysgonomonas gadei [CABKPQ]
394632
394706
+
Lys
CTT
[ENA]
¡û
>W2010273103
CABKUN020000001
Bacteroidota
Porphyromonadaceae bacterium [CABKUN]
126842
126915
+
Lys
CTT
[ENA]
¡û
>W2011411524
RDSD01000010
Bacteroidota
Proteiniphilum sp. X52 [RDSD]
114929
115002
+
Lys
CTT
[ENA]
¡û
>W2011496120
RXHR01000014
Bacteroidota
Porphyromonadaceae bacterium SYSU GA16107 [RXHR]
27777
27703
-
Lys
CTT
[ENA]
¡û
>W2011496163
RXHS01000014
Bacteroidota
Porphyromonadaceae bacterium SYSU GA16112 [RXHS]
37743
37817
+
Lys
CTT
[ENA]
¡û
>ENV09002672
ADGC01011604
Wallaby gut metagenome MeugComb_C1
411
338
-
Lys
CTT
[ENA]
¡û
>ENV09002673
ADGC01011604
Wallaby gut metagenome MeugComb_C1
275
202
-
Lys
CTT
[ENA]
¡û
>W2110105186
CAJGDW010000023
Bacteroidota
Paludibacteraceae bacterium [CAJGDW]
2203
2130
-
Lys
CTT
[ENA]
¡û
>W2110239184
JACMIB010000009
Bacteroidota
Dysgonomonas sp. HGC4 [JACMIB]
766665
766738
+
Lys
CTT
[ENA]
¡û
>W2110303737
JADCLQ010000036
Bacteroidota
Dysgonomonas sp. GY75 [JADCLQ]
414698
414771
+
Lys
CTT
[ENA]
¡û
>W2110303780
JADCLR010000021
Bacteroidota
Dysgonomonas sp. GY617 [JADCLR]
509117
509190
+
Lys
CTT
[ENA]
¡û
>C231131255
CP073586
Bacteroidota
Proteiniphilum propionicum JNU-WLY501 [CP073586]
1322305
1322378
+
Lys
CTT
-
¡û
>C241137705
CP049857
Bacteroidota
Dysgonomonas sp. HDW5A [CP049857]
1520251
1520178
-
Lys
CTT
-
¡û
>C241137749
CP049858
Bacteroidota
Dysgonomonas sp. HDW5B [CP049858]
1612564
1612491
-
Lys
CTT
-
¡û
>W1510562677
CTEJ01000001
Bacteroidota
Lascolabacillus massiliensis SIT8 [CTEJ]
126842
126917
+
Lys
CTT
[ENA]
¡û
>W1510650957
CVRU01000004
Bacteroidota
Dysgonomonas sp. HGC4 [CVRU]
7501
7428
-
Lys
CTT
[ENA]
¡û
>W11119869
ADLV01000027
Bacteroidota
Dysgonomonas gadei ATCC BAA-286 [ADLV]
226935
227010
+
Lys
CTT
[ENA]
¡û
>W1610080790
BDCR01000001
Bacteroidota
Paludibacter jiangxiensis [BDCR]
954295
954220
-
Lys
CTT
[ENA]
¡û
>W1710079349
BDCR01000001
Bacteroidota
Paludibacter jiangxiensis [BDCR]
954295
954220
-
Lys
CTT
[ENA]
¡û
>W1710578575
FPBR01000043
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
14679
14752
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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