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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51286 (4 seq.)
>W131175886
ARJP01000028
Verrucomicrobiota
Rubritalea marina DSM 17716 [ARJP]
117577
117490
-
Leu
AAG
[ENA]
¡û
>W131175897
ARJP01000031
Verrucomicrobiota
Rubritalea marina DSM 17716 [ARJP]
214532
214445
-
Leu
AAG
[ENA]
¡û
>W2110433932
JAENIM010000021
Verrucomicrobiota
Persicirhabdus sediminis _KCTC 22039 [JAENIM]
154220
154307
+
Leu
AAG
[ENA]
¡û
>W1710587653
FQYR01000005
Verrucomicrobiota
Rubritalea squalenifaciens DSM 18772 [FQYR]
50070
49983
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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