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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51326 (26 seq.)
>W131228736
AUGE01000023
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
3195
3108
-
Ser
CGA
[ENA]
¡û
>w024781
AAZA01000007
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
105864
105775
-
Ser
CGA
[ENA]
¡û
>WENV180315350
OBKH01072479
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
389
302
-
Ser
CGA
[ENA]
¡û
>C08005207
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
4077128
4077215
+
Ser
CGA
[Ensembl]
¡û
>WENV170660566
JXWT01140823
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
389
302
-
Ser
CGA
[ENA]
¡û
>W2010145378
BLXX01000003
Thermodesulfobacteriota
Geomonas sp. Red330 [BLXX]
334380
334293
-
Ser
CGA
[ENA]
¡û
>W2010145457
BLXY01000013
Thermodesulfobacteriota
Geomonas sp. Red736 [BLXY]
87689
87602
-
Ser
CGA
[ENA]
¡û
>W2010145495
BLXZ01000004
Thermodesulfobacteriota
Geomonas sp. Red745 [BLXZ]
238545
238458
-
Ser
CGA
[ENA]
¡û
>W2011352672
RAHW01000001
Thermodesulfobacteriota
Geobacter sp. S43 [RAHW]
136542
136629
+
Ser
CGA
[ENA]
¡û
>W2011693998
SSYA01000001
Thermodesulfobacteriota
Geobacter sp. S62 [SSYA]
1850831
1850744
-
Ser
CGA
[ENA]
¡û
>W2011694066
SSYB01000004
Thermodesulfobacteriota
Geobacter sp. Red53 [SSYB]
144600
144687
+
Ser
CGA
[ENA]
¡û
>W2110428419
JAEMHK010000012
Thermodesulfobacteriota
Geomonas propionica Red259 [JAEMHK]
90255
90342
+
Ser
CGA
[ENA]
¡û
>W2110428480
JAEMHL010000026
Thermodesulfobacteriota
Geomonas anaerohicana Red421 [JAEMHL]
20476
20563
+
Ser
CGA
[ENA]
¡û
>W2110428506
JAEMHM010000009
Thermodesulfobacteriota
Geomesophilobacter sediminis Red875 [JAEMHM]
91428
91515
+
Ser
CGA
[ENA]
¡û
>W2110617926
JAHLME010000001
Thermodesulfobacteriota
Geomonas azotofigens Red51 [JAHLME]
71362
71449
+
Ser
CGA
[ENA]
¡û
>W2110617989
JAHLMF010000003
Thermodesulfobacteriota
Geomonas diazotrophica Red69 [JAHLMF]
124280
124193
-
Ser
CGA
[ENA]
¡û
>W2110689876
JAINZN010000002
Thermodesulfobacteriota
Geomonas sp. RG17 [JAINZN]
985147
985060
-
Ser
CGA
[ENA]
¡û
>W2110689940
JAINZO010000002
Thermodesulfobacteriota
Geomonas sp. RG53 [JAINZO]
132608
132695
+
Ser
CGA
[ENA]
¡û
>C211008667
AP023213
Thermodesulfobacteriota
Geobacter bremensis R4 [AP023213]
4027279
4027192
-
Ser
CGA
-
¡û
>C211349332
CP076723
Thermodesulfobacteriota
Geomonas sp. RG10 [CP076723]
3937660
3937747
+
Ser
CGA
-
¡û
>C211349389
CP076724
Thermodesulfobacteriota
Geomonas sp. RG29 [CP076724]
3717384
3717471
+
Ser
CGA
-
¡û
>C211359144
CP077683
Thermodesulfobacteriota
Geomonas sp. RG2 [CP077683]
4346515
4346428
-
Ser
CGA
-
¡û
>C211359199
CP077684
Thermodesulfobacteriota
Geomonas sp. RF4 [CP077684]
3878094
3878181
+
Ser
CGA
-
¡û
>C211363264
CP078096
Thermodesulfobacteriota
Geomonas sp. RG3 [CP078096]
2380985
2381072
+
Ser
CGA
-
¡û
>C231369694
CP096574
Thermodesulfobacteriota
Geomonas paludis RG22 [CP096574]
626455
626368
-
Ser
CGA
-
¡û
>W1710087168
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
3977199
3977286
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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