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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513282 (68 seq.)
>W1710804997
LJZQ01000016
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
59503
59428
-
Asn
GTT
[ENA]
¡û
>W1710804998
LJZQ01000016
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
44785
44710
-
Asn
GTT
[ENA]
¡û
>W1710854395
LLXM01000006
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
53775
53700
-
Asn
GTT
[ENA]
¡û
>W1710854396
LLXM01000006
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
39158
39083
-
Asn
GTT
[ENA]
¡û
>W1711626881
MPKY01000001
Gammaproteobacteria
Marinobacter nauticus hydrocarbonoclasticus [MPKY]
1986788
1986713
-
Asn
GTT
[ENA]
¡û
>W1711626882
MPKY01000001
Gammaproteobacteria
Marinobacter nauticus hydrocarbonoclasticus [MPKY]
1971798
1971723
-
Asn
GTT
[ENA]
¡û
>WENV181234021
OFET01000908
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
11151
11076
-
Asn
GTT
[ENA]
¡û
>WENV181234560
OFEU01000387
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
27076
27151
+
Asn
GTT
[ENA]
¡û
>W141152500
AXBV01000043
Gammaproteobacteria
Marinobacter sp. ES-1 [AXBV]
15134
15059
-
Asn
GTT
[ENA]
¡û
>W141152501
AXBV01000043
Gammaproteobacteria
Marinobacter sp. ES-1 [AXBV]
515
440
-
Asn
GTT
[ENA]
¡û
>WENV170015943
AZIJ01005044
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
14890
14815
-
Asn
GTT
[ENA]
¡û
>WENV170015944
AZIJ01005045
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
11362
11287
-
Asn
GTT
[ENA]
¡û
>WENV170112437
CEGE01010300
[CEGE] microbial mat metagenome; grass silage
711
636
-
Asn
GTT
[ENA]
¡û
>WENV170112564
CEGF01003705
[CEGF] microbial mat metagenome; grass silage
219
144
-
Asn
GTT
[ENA]
¡û
>WENV170112684
CEGF01012811
[CEGF] microbial mat metagenome; grass silage
1037
962
-
Asn
GTT
[ENA]
¡û
>WENV170265967
CERE01026915
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
373
298
-
Asn
GTT
[ENA]
¡û
>WENV170294505
CESC01083938
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
425
350
-
Asn
GTT
[ENA]
¡û
>WENV170943618
MDTG01400176
[MDTG] marine metagenome; seawater
981
906
-
Asn
GTT
[ENA]
¡û
>W1910882832
NEFY01000006
Gammaproteobacteria
Marinobacter vinifirmus FB1 [NEFY]
51716
51641
-
Asn
GTT
[ENA]
¡û
>W1910882833
NEFY01000006
Gammaproteobacteria
Marinobacter vinifirmus FB1 [NEFY]
36966
36891
-
Asn
GTT
[ENA]
¡û
>W1911278075
NTFH01000003
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
155696
155621
-
Asn
GTT
[ENA]
¡û
>W1911278076
NTFH01000003
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
140911
140836
-
Asn
GTT
[ENA]
¡û
>W1810385112
PXNN01000006
Gammaproteobacteria
Marinobacter halophilus JCM 30472 [PXNN]
89158
89083
-
Asn
GTT
[ENA]
¡û
>W1810385113
PXNN01000006
Gammaproteobacteria
Marinobacter halophilus JCM 30472 [PXNN]
74444
74369
-
Asn
GTT
[ENA]
¡û
>W1810385188
PXNO01000027
Gammaproteobacteria
Marinobacter shengliensis SL013A34A2 [PXNO]
1108310
1108385
+
Asn
GTT
[ENA]
¡û
>W1810385189
PXNO01000027
Gammaproteobacteria
Marinobacter shengliensis SL013A34A2 [PXNO]
1123083
1123158
+
Asn
GTT
[ENA]
¡û
>W1810385243
PXNP01000111
Gammaproteobacteria
Marinobacter fuscus NH169-3 [PXNP]
23407
23482
+
Asn
GTT
[ENA]
¡û
>W1810385244
PXNP01000111
Gammaproteobacteria
Marinobacter fuscus NH169-3 [PXNP]
37988
38063
+
Asn
GTT
[ENA]
¡û
>W2010458745
JAAFYR010000002
Gammaproteobacteria
Marinobacter daqiaonensis YCSA40 [JAAFYR]
524986
525061
+
Asn
GTT
[ENA]
¡û
>W2010951010
NEFY01000006
Gammaproteobacteria
Marinobacter vinifirmus FB1 [NEFY]
51716
51641
-
Asn
GTT
[ENA]
¡û
>W2010951011
NEFY01000006
Gammaproteobacteria
Marinobacter vinifirmus FB1 [NEFY]
36966
36891
-
Asn
GTT
[ENA]
¡û
>W2011071794
NTFH01000003
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
155696
155621
-
Asn
GTT
[ENA]
¡û
>W2011071795
NTFH01000003
Gammaproteobacteria
Marinobacter sp. PWS21 [NTFH]
140911
140836
-
Asn
GTT
[ENA]
¡û
>W2011706485
SWKL01000052
Gammaproteobacteria
Marinobacter sp. LZ-6 [SWKL]
250595
250670
+
Asn
GTT
[ENA]
¡û
>W2011706486
SWKL01000052
Gammaproteobacteria
Marinobacter sp. LZ-6 [SWKL]
265384
265459
+
Asn
GTT
[ENA]
¡û
>W2110022310
BMFE01000003
Gammaproteobacteria
Marinobacter halophilus CGMCC 1.12481 [BMFE]
207885
207960
+
Asn
GTT
[ENA]
¡û
>W2110022311
BMFE01000003
Gammaproteobacteria
Marinobacter halophilus CGMCC 1.12481 [BMFE]
222599
222674
+
Asn
GTT
[ENA]
¡û
>W2110201647
JACDWR010000112
Gammaproteobacteria
Marinobacter sp. bablab_jr015 [JACDWR]
43204
43129
-
Asn
GTT
[ENA]
¡û
>W2110201648
JACDWR010000112
Gammaproteobacteria
Marinobacter sp. bablab_jr015 [JACDWR]
28458
28383
-
Asn
GTT
[ENA]
¡û
>W2110299610
JADARC010000099
Gammaproteobacteria
Marinobacter sp. bablab_jr003 [JADARC]
43204
43129
-
Asn
GTT
[ENA]
¡û
>W2110299611
JADARC010000099
Gammaproteobacteria
Marinobacter sp. bablab_jr003 [JADARC]
28458
28383
-
Asn
GTT
[ENA]
¡û
>C231531153
CP110342
Gammaproteobacteria
Marinobacter sp. AN1 [CP110342]
2514827
2514902
+
Asn
GTT
-
¡û
>C231531154
CP110342
Gammaproteobacteria
Marinobacter sp. AN1 [CP110342]
2533131
2533206
+
Asn
GTT
-
¡û
>C231569389
CP115811
Gammaproteobacteria
Marinobacter alkaliphilus JY28 [CP115811]
2515325
2515400
+
Asn
GTT
-
¡û
>C231569390
CP115811
Gammaproteobacteria
Marinobacter alkaliphilus JY28 [CP115811]
2530131
2530206
+
Asn
GTT
-
¡û
>C241013081
AP028062
Gammaproteobacteria
Marinobacter shengliensis D49 [AP028062]
2516640
2516715
+
Asn
GTT
-
¡û
>C241013082
AP028062
Gammaproteobacteria
Marinobacter shengliensis D49 [AP028062]
2531445
2531520
+
Asn
GTT
-
¡û
>C241094793
CP045324
Gammaproteobacteria
Marinobacter sp. THAF197a [CP045324]
2365467
2365542
+
Asn
GTT
-
¡û
>C241094794
CP045324
Gammaproteobacteria
Marinobacter sp. THAF197a [CP045324]
2380192
2380267
+
Asn
GTT
-
¡û
>C241095558
CP045367
Gammaproteobacteria
Marinobacter sp. THAF39 [CP045367]
2358351
2358426
+
Asn
GTT
-
¡û
>C241095559
CP045367
Gammaproteobacteria
Marinobacter sp. THAF39 [CP045367]
2373076
2373151
+
Asn
GTT
-
¡û
>W1511534209
JYNR01000001
Gammaproteobacteria
Marinobacter excellens HL-55 [JYNR]
998892
998817
-
Asn
GTT
[ENA]
¡û
>W1511534210
JYNR01000001
Gammaproteobacteria
Marinobacter excellens HL-55 [JYNR]
984175
984100
-
Asn
GTT
[ENA]
¡û
>C161076709
CP014754
Gammaproteobacteria
Marinobacter sp. LQ44 [CP014754]
606612
606687
+
Asn
GTT
[Ensembl]
¡û
>C161076710
CP014754
Gammaproteobacteria
Marinobacter sp. LQ44 [CP014754]
621338
621413
+
Asn
GTT
[Ensembl]
¡û
>W1610668854
LJZQ01000016
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
59503
59428
-
Asn
GTT
[ENA]
¡û
>W1610668855
LJZQ01000016
Gammaproteobacteria
Marinobacter excellens HL-55 [LJZQ]
44785
44710
-
Asn
GTT
[ENA]
¡û
>W1610716672
LLXM01000006
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
53775
53700
-
Asn
GTT
[ENA]
¡û
>W1610716673
LLXM01000006
Gammaproteobacteria
Marinobacter sp. P4B1 [LLXM]
39158
39083
-
Asn
GTT
[ENA]
¡û
>W1610781606
LOCO01000016
Gammaproteobacteria
Marinobacter excellens LAMA 842 [LOCO]
59056
58981
-
Asn
GTT
[ENA]
¡û
>W1610781607
LOCO01000016
Gammaproteobacteria
Marinobacter excellens LAMA 842 [LOCO]
44346
44271
-
Asn
GTT
[ENA]
¡û
>W1710528398
FNNE01000006
Gammaproteobacteria
Marinobacter mobilis [FNNE]
268711
268636
-
Asn
GTT
[ENA]
¡û
>W1710528399
FNNE01000006
Gammaproteobacteria
Marinobacter mobilis [FNNE]
254009
253934
-
Asn
GTT
[ENA]
¡û
>W1710553873
FOHZ01000001
Gammaproteobacteria
Marinobacter segnicrescens [FOHZ]
205478
205553
+
Asn
GTT
[ENA]
¡û
>W1710553874
FOHZ01000001
Gammaproteobacteria
Marinobacter segnicrescens [FOHZ]
223782
223857
+
Asn
GTT
[ENA]
¡û
>W1710569173
FOUE01000002
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
673957
673882
-
Asn
GTT
[ENA]
¡û
>W1710569174
FOUE01000002
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
659230
659155
-
Asn
GTT
[ENA]
¡û
>W1710575108
FOYW01000001
Gammaproteobacteria
Marinobacter daqiaonensis [FOYW]
115503
115428
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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