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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513332 (48 seq.)
>W1710857027
LLZU01000024
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
52364
52289
-
Lys
TTT
[ENA]
¡û
>W1710860294
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
190215
190142
-
Lys
TTT
[ENA]
¡û
>W1710866976
LMHX01000034
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
108931
109004
+
Lys
TTT
[ENA]
¡û
>W1711183420
LWLA01000019
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
40637
40710
+
Lys
TTT
[ENA]
¡û
>W131166353
ARCK01000008
Actinomycetota
Wenjunlia vitaminophila DSM 41686 [ARCK]
167518
167593
+
Lys
TTT
[ENA]
¡û
>WENV180023364
FTHV01001583
[FTHV] metagenome; soil
1883
1810
-
Lys
TTT
[ENA]
¡û
>WENV180023493
FTHY01001513
[FTHY] metagenome; soil
1883
1810
-
Lys
TTT
[ENA]
¡û
>WENV180024764
FTIJ01006076
[FTIJ] metagenome; soil
1557
1484
-
Lys
TTT
[ENA]
¡û
>WENV180033150
FTKF01001741
[FTKF] metagenome; soil
5244
5171
-
Lys
TTT
[ENA]
¡û
>WENV180033574
FTKL01000064
[FTKL] metagenome; soil
132
206
+
Lys
TTT
[ENA]
¡û
>WENV180033717
FTKL01037927
[FTKL] metagenome; soil
865
938
+
Lys
TTT
[ENA]
¡û
>W141282792
JAIZ01000583
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
2257
2184
-
Lys
TTT
[ENA]
¡û
>C181198638
CP031264
Actinomycetota
Peterkaempfera bronchialis DSM 106435 [CP031264]
3180629
3180555
-
Lys
TTT
-
¡û
>W141726635
JNBY01000093
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
408413
408488
+
Lys
TTT
[ENA]
¡û
>W141760870
JOAI01000023
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
126073
126148
+
Lys
TTT
[ENA]
¡û
>W141763714
JOCF01000038
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
65770
65843
+
Lys
TTT
[ENA]
¡û
>W141771111
JOGY01000239
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
2142
2067
-
Lys
TTT
[ENA]
¡û
>W141771897
JOHM01000541
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
4346
4271
-
Lys
TTT
[ENA]
¡û
>W141771967
JOHN01000036
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
95938
95863
-
Lys
TTT
[ENA]
¡û
>W141820103
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
3378754
3378681
-
Lys
TTT
[ENA]
¡û
>W1911243768
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3568524
3568451
-
Lys
TTT
[ENA]
¡û
>W1810121549
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
3727906
3727832
-
Lys
TTT
[ENA]
¡û
>W1810195842
PKSK01001666
Actinomycetota
Streptomyces sp. DJ [PKSK]
1370
1295
-
Lys
TTT
[ENA]
¡û
>W1810394681
PYBW01000027
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
32521
32594
+
Lys
TTT
[ENA]
¡û
>W2010705626
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
4077655
4077729
+
Lys
TTT
[ENA]
¡û
>W2011069127
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3568524
3568451
-
Lys
TTT
[ENA]
¡û
>W2011491069
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
1831484
1831411
-
Lys
TTT
[ENA]
¡û
>W2012047336
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
4206133
4206207
+
Lys
TTT
[ENA]
¡û
>W2110032032
BMMS01000006
Actinomycetota
Streptomyces tyrosinilyticus CGMCC 4.7201 [BMMS]
203053
203127
+
Lys
TTT
[ENA]
¡û
>W2110039450
BMSD01000026
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
71437
71364
-
Lys
TTT
[ENA]
¡û
>W2110053269
BNBO01000017
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
61849
61922
+
Lys
TTT
[ENA]
¡û
>W2110556235
JAGIYX010000013
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
127013
126940
-
Lys
TTT
[ENA]
¡û
>C201192445
CP046907
Actinomycetota
Streptomyces sp. SCUT-3 [CP046907]
2614384
2614309
-
Lys
TTT
-
¡û
>W2110746790
LFMD02000002
Actinomycetota
Kitasatospora sp. SUK 42 [LFMD]
1680626
1680552
-
Lys
TTT
[ENA]
¡û
>W2110748577
MECK01000071
Actinomycetota
Streptomyces sp. CBMA123 [MECK]
4536
4609
+
Lys
TTT
[ENA]
¡û
>W2110751260
MSJQ01000361
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
15518
15444
-
Lys
TTT
[ENA]
¡û
>C241169951
CP054919
Actinomycetota
Kitasatospora sp. NA04385 [CP054919]
4325883
4325956
+
Lys
TTT
-
¡û
>C241209720
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
4941059
4941132
+
Lys
TTT
-
¡û
>C241210222
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
4731208
4731135
-
Lys
TTT
-
¡û
>C241210260
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
4746477
4746551
+
Lys
TTT
-
¡û
>C241321827
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
5028566
5028639
+
Lys
TTT
-
¡û
>W1511529102
JYJF01000171
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
979
904
-
Lys
TTT
[ENA]
¡û
>W1610633377
LIQR01000102
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
13638
13711
+
Lys
TTT
[ENA]
¡û
>W1610719408
LLZU01000024
Actinomycetota
Wenjunlia vitaminophila vitaminophilus [LLZU]
52364
52289
-
Lys
TTT
[ENA]
¡û
>W1610722640
LMCT01000023
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
190215
190142
-
Lys
TTT
[ENA]
¡û
>W1610729322
LMHX01000034
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
108931
109004
+
Lys
TTT
[ENA]
¡û
>W1710767809
LIQR01000102
Actinomycetota
Peterkaempfera griseoplana griseoplanus [LIQR]
13638
13711
+
Lys
TTT
[ENA]
¡û
>W1710769556
LISX01000017
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
5360
5285
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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