This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513380 (82 seq.)
>WENV180590613
OCOT01100276
[OCOT] marine metagenome; ENVO:00002010
283
208
-
His
GTG
[ENA]
¡û
>WENV181313691
OFJH01001143
[OFJH] marine metagenome; seawater
1170
1095
-
His
GTG
[ENA]
¡û
>WENV181319208
OFKD01000215
[OFKD] marine metagenome; seawater
2896
2971
+
His
GTG
[ENA]
¡û
>WENV181321140
OFKK01002917
[OFKK] marine metagenome; seawater
776
701
-
His
GTG
[ENA]
¡û
>WENV181325439
OFLJ01000719
[OFLJ] seawater metagenome; seawater
3547
3622
+
His
GTG
[ENA]
¡û
>WENV181391158
OFRQ01048989
[OFRQ] seawater metagenome; seawater
107
182
+
His
GTG
[ENA]
¡û
>WENV181392922
OFRX01017154
[OFRX] seawater metagenome; seawater
701
626
-
His
GTG
[ENA]
¡û
>WENV182543135
OJBA01000542
[OJBA] seawater metagenome; Sea water
929
1004
+
His
GTG
[ENA]
¡û
>WENV182544515
OJBG01010843
[OJBG] seawater metagenome; Sea water
128
53
-
His
GTG
[ENA]
¡û
>WENV182548158
OJBV01001194
[OJBV] seawater metagenome; Sea water
2951
3026
+
His
GTG
[ENA]
¡û
>WENV182550727
OJCA01035130
[OJCA] seawater metagenome; Sea water
61
136
+
His
GTG
[ENA]
¡û
>WENV182551254
OJCC01000148
[OJCC] seawater metagenome; Sea water
3100
3025
-
His
GTG
[ENA]
¡û
>WENV182556756
OJDH01000047
[OJDH] seawater metagenome; Sea water
47676
47751
+
His
GTG
[ENA]
¡û
>WENV182560112
OJDS01053099
[OJDS] seawater metagenome; Sea water
243
168
-
His
GTG
[ENA]
¡û
>WENV182562947
OJEA01015699
[OJEA] seawater metagenome; Sea water
328
403
+
His
GTG
[ENA]
¡û
>WENV182563411
OJEC01000045
[OJEC] seawater metagenome; Sea water
18421
18496
+
His
GTG
[ENA]
¡û
>WENV182564750
OJEF01005224
[OJEF] seawater metagenome; Sea water
3049
2974
-
His
GTG
[ENA]
¡û
>WENV182565333
OJEH01002581
[OJEH] seawater metagenome; Sea water
4821
4896
+
His
GTG
[ENA]
¡û
>WENV182569419
OJEZ01000162
[OJEZ] seawater metagenome; Sea water
5070
5145
+
His
GTG
[ENA]
¡û
>WENV182570763
OJFF01000318
[OJFF] seawater metagenome; Sea water
4913
4988
+
His
GTG
[ENA]
¡û
>WENV182572031
OJFL01000106
[OJFL] seawater metagenome; Sea water
34502
34577
+
His
GTG
[ENA]
¡û
>WENV182578358
OJGN01000929
[OJGN] seawater metagenome; Sea water
344
269
-
His
GTG
[ENA]
¡û
>WENV182580723
OJGW01009170
[OJGW] seawater metagenome; Sea water
1827
1752
-
His
GTG
[ENA]
¡û
>WENV182586665
OJHK01002824
[OJHK] seawater metagenome; Sea water
1474
1399
-
His
GTG
[ENA]
¡û
>WENV182589768
OJIG01000351
[OJIG] seawater metagenome; Sea water
3238
3313
+
His
GTG
[ENA]
¡û
>WENV182594264
OJIV01002426
[OJIV] seawater metagenome; Sea water
938
863
-
His
GTG
[ENA]
¡û
>WENV183055358
OLGX01005672
[OLGX] seawater metagenome; Sea water
266
191
-
His
GTG
[ENA]
¡û
>WENV183055790
OLHH01000296
[OLHH] seawater metagenome; Sea water
1592
1517
-
His
GTG
[ENA]
¡û
>WENV183061398
OLHZ01007056
[OLHZ] seawater metagenome; Sea water
1185
1260
+
His
GTG
[ENA]
¡û
>WENV183619296
OOFQ01000707
[OOFQ] marine metagenome; seawater
3547
3622
+
His
GTG
[ENA]
¡û
>WENV183626265
OOGH01049992
[OOGH] marine metagenome; seawater
107
182
+
His
GTG
[ENA]
¡û
>WENV183629264
OOGP01015400
[OOGP] marine metagenome; seawater
701
626
-
His
GTG
[ENA]
¡û
>WENV170016010
AZIJ01007605
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
5673
5748
+
His
GTG
[ENA]
¡û
>WENV170112058
CEGC01005250
[CEGC] microbial mat metagenome; grass silage
3459
3384
-
His
GTG
[ENA]
¡û
>WENV170112060
CEGC01005250
[CEGC] microbial mat metagenome; grass silage
3242
3167
-
His
GTG
[ENA]
¡û
>WENV170112251
CEGE01000271
[CEGE] microbial mat metagenome; grass silage
4389
4314
-
His
GTG
[ENA]
¡û
>WENV170112253
CEGE01000271
[CEGE] microbial mat metagenome; grass silage
4172
4097
-
His
GTG
[ENA]
¡û
>WENV170112509
CEGF01002033
[CEGF] microbial mat metagenome; grass silage
948
873
-
His
GTG
[ENA]
¡û
>WENV170112511
CEGF01002034
[CEGF] microbial mat metagenome; grass silage
151
76
-
His
GTG
[ENA]
¡û
>WENV170146910
CENZ01093719
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
23110
23185
+
His
GTG
[ENA]
¡û
>WENV170324173
CESS01057295
[CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
313
388
+
His
GTG
[ENA]
¡û
>WENV170326462
CESU01002308
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
1
-
His
GTG
[ENA]
¡û
>WENV170534578
CEWO01313945
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
218
293
+
His
GTG
[ENA]
¡û
>WENV170567370
FLMP01000151
[FLMP] seawater metagenome; seawater
10725
10800
+
His
GTG
[ENA]
¡û
>WENV170569575
FLMP01235512
[FLMP] seawater metagenome; seawater
174
249
+
His
GTG
[ENA]
¡û
>WENV170635458
JDSF01027027
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
167
242
+
His
GTG
[ENA]
¡û
>WENV170655744
JTFN01066773
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
238
163
-
His
GTG
[ENA]
¡û
>WENV170655746
JTFN01066774
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
210
285
+
His
GTG
[ENA]
¡û
>WENV170656322
JTFO01010033
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1581
1656
+
His
GTG
[ENA]
¡û
>WENV170656601
JTFO01027010
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
122
47
-
His
GTG
[ENA]
¡û
>WENV170656849
JTFO01052104
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
210
285
+
His
GTG
[ENA]
¡û
>WENV170657056
JTFO01073189
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
7
82
+
His
GTG
[ENA]
¡û
>WENV170871750
MDTB01209888
[MDTB] marine metagenome; seawater
21690
21615
-
His
GTG
[ENA]
¡û
>WENV170940891
MDTG01350782
[MDTG] marine metagenome; seawater
202
277
+
His
GTG
[ENA]
¡û
>WENV170951754
MEHZ011567841
[MEHZ] marine metagenome; marine surface water
3670
3745
+
His
GTG
[ENA]
¡û
>WENV170953273
MEHZ011637116
[MEHZ] marine metagenome; marine surface water
486
561
+
His
GTG
[ENA]
¡û
>C181011005
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1794053
1793978
-
His
GTG
-
¡û
>C181071017
CP022684
Gammaproteobacteria
Ketobacter alkanivorans GI5 [CP022684]
332175
332100
-
His
GTG
-
¡û
>W1810400699
PYGI01000006
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
104935
105010
+
His
GTG
[ENA]
¡û
>W1810400701
PYGI01000006
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
105150
105225
+
His
GTG
[ENA]
¡û
>W2010683114
JACEMT010000043
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
32616
32691
+
His
GTG
[ENA]
¡û
>W2010683116
JACEMT010000043
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
33214
33289
+
His
GTG
[ENA]
¡û
>W2011588727
SIHQ01000006
Gammaproteobacteria
Oceanospirillales bacterium Hp36 [SIHQ]
204384
204309
-
His
GTG
[ENA]
¡û
>W2011588739
SIHQ01000012
Gammaproteobacteria
Oceanospirillales bacterium Hp36 [SIHQ]
114613
114688
+
His
GTG
[ENA]
¡û
>W2110269368
JACVEW010000013
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
101019
101094
+
His
GTG
[ENA]
¡û
>W2110269370
JACVEW010000013
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
101222
101296
+
His
GTG
[ENA]
¡û
>W2110313396
JADEYS010000009
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
118085
118010
-
His
GTG
[ENA]
¡û
>W2110313398
JADEYS010000009
Gammaproteobacteria
Pontibacterium sp. N1Y112 [JADEYS]
117885
117810
-
His
GTG
[ENA]
¡û
>W2110639269
JAHQZT010000002
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
19783
19708
-
His
GTG
[ENA]
¡û
>W2110639271
JAHQZT010000002
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
19568
19493
-
His
GTG
[ENA]
¡û
>C201250642
CP051666
Gammaproteobacteria
Marinobacterium sp. LSUCC0821 [CP051666]
741014
740939
-
His
GTG
-
¡û
>C211032119
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2139930
2139855
-
His
GTG
-
¡û
>C211032121
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2139713
2139638
-
His
GTG
-
¡û
>C231313087
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
1646669
1646744
+
His
GTG
-
¡û
>C231313089
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
1646886
1646961
+
His
GTG
-
¡û
>W2130017136
JACVEW010000039
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
2
77
+
His
GTG
[ENA]
¡û
>W11170406
AFPL01000026
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
51648
51723
+
His
GTG
[ENA]
¡û
>W11170408
AFPL01000026
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
95649
95724
+
His
GTG
[ENA]
¡û
>W1710533741
FNRJ01000002
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
57395
57320
-
His
GTG
[ENA]
¡û
>W1710533743
FNRJ01000002
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
18887
18812
-
His
GTG
[ENA]
¡û
>W1710596376
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
11652
11577
-
His
GTG
[ENA]
¡û
>W1710596378
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
11435
11360
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK