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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.513383 (93 seq.)
>WENV180209820
OBAL01026043
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
427
352
-
Val
TAC
[ENA]
¡û
>WENV180362216
OBNW01071990
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
148
223
+
Val
TAC
[ENA]
¡û
>WENV170112053
CEGC01003546
[CEGC] microbial mat metagenome; grass silage
1590
1515
-
Val
TAC
[ENA]
¡û
>WENV170112257
CEGE01000421
[CEGE] microbial mat metagenome; grass silage
22
97
+
Val
TAC
[ENA]
¡û
>WENV170112259
CEGE01000421
[CEGE] microbial mat metagenome; grass silage
281
356
+
Val
TAC
[ENA]
¡û
>WENV170112583
CEGF01004988
[CEGF] microbial mat metagenome; grass silage
1465
1390
-
Val
TAC
[ENA]
¡û
>WENV170112618
CEGF01007191
[CEGF] microbial mat metagenome; grass silage
49
124
+
Val
TAC
[ENA]
¡û
>WENV170655901
JTFN01093323
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
885
810
-
Val
TAC
[ENA]
¡û
>WENV170656064
JTFN01124199
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
26
101
+
Val
TAC
[ENA]
¡û
>WENV170657097
JTFO01083442
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
201
126
-
Val
TAC
[ENA]
¡û
>WENV170657457
JTFO01157668
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
201
126
-
Val
TAC
[ENA]
¡û
>W1810248956
PQBW01003108
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
148
73
-
Val
TAC
[ENA]
¡û
>W1810400716
PYGI01000013
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
49237
49312
+
Val
TAC
[ENA]
¡û
>W1810400718
PYGI01000013
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
49443
49518
+
Val
TAC
[ENA]
¡û
>W1810400720
PYGI01000013
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
49647
49722
+
Val
TAC
[ENA]
¡û
>W1810400722
PYGI01000013
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
49851
49926
+
Val
TAC
[ENA]
¡û
>W2011633626
SMFU01000007
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
1670173
1670098
-
Val
TAC
[ENA]
¡û
>W2011633628
SMFU01000007
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
1669883
1669808
-
Val
TAC
[ENA]
¡û
>W2011633629
SMFU01000007
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
1669676
1669601
-
Val
TAC
[ENA]
¡û
>W2012235718
WBYG01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-121 [WBYG]
431956
432031
+
Val
TAC
[ENA]
¡û
>W2012235720
WBYG01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-121 [WBYG]
432164
432239
+
Val
TAC
[ENA]
¡û
>W2012235722
WBYG01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-121 [WBYG]
432519
432594
+
Val
TAC
[ENA]
¡û
>W2012235769
WBYH01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-127 [WBYH]
652547
652622
+
Val
TAC
[ENA]
¡û
>W2012235771
WBYH01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-127 [WBYH]
652755
652830
+
Val
TAC
[ENA]
¡û
>W2012235773
WBYH01000001
Gammaproteobacteria
Marinobacterium sp. xm-a-127 [WBYH]
652956
653031
+
Val
TAC
[ENA]
¡û
>W2012235832
WBYI01000007
Gammaproteobacteria
Marinobacterium sp. xm-a-152 [WBYI]
19900
19825
-
Val
TAC
[ENA]
¡û
>W2012235834
WBYI01000007
Gammaproteobacteria
Marinobacterium sp. xm-a-152 [WBYI]
19692
19617
-
Val
TAC
[ENA]
¡û
>W2012235836
WBYI01000007
Gammaproteobacteria
Marinobacterium sp. xm-a-152 [WBYI]
19418
19343
-
Val
TAC
[ENA]
¡û
>W2012235912
WBYJ01000011
Gammaproteobacteria
Marinobacterium sp. xm-d-420 [WBYJ]
25871
25946
+
Val
TAC
[ENA]
¡û
>W2012235914
WBYJ01000011
Gammaproteobacteria
Marinobacterium sp. xm-d-420 [WBYJ]
26079
26154
+
Val
TAC
[ENA]
¡û
>W2012235916
WBYJ01000011
Gammaproteobacteria
Marinobacterium sp. xm-d-420 [WBYJ]
26280
26355
+
Val
TAC
[ENA]
¡û
>W2012235928
WBYK01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-509 [WBYK]
172317
172242
-
Val
TAC
[ENA]
¡û
>W2012235930
WBYK01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-509 [WBYK]
172109
172034
-
Val
TAC
[ENA]
¡û
>W2012235932
WBYK01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-509 [WBYK]
171754
171679
-
Val
TAC
[ENA]
¡û
>W2012235980
WBYL01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-510 [WBYL]
175552
175477
-
Val
TAC
[ENA]
¡û
>W2012235982
WBYL01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-510 [WBYL]
175344
175269
-
Val
TAC
[ENA]
¡û
>W2012235984
WBYL01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-510 [WBYL]
175143
175068
-
Val
TAC
[ENA]
¡û
>W2012236025
WBYM01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-530 [WBYM]
84221
84146
-
Val
TAC
[ENA]
¡û
>W2012236027
WBYM01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-530 [WBYM]
84013
83938
-
Val
TAC
[ENA]
¡û
>W2012236029
WBYM01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-530 [WBYM]
83739
83664
-
Val
TAC
[ENA]
¡û
>W2012236075
WBYN01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-543 [WBYN]
319178
319253
+
Val
TAC
[ENA]
¡û
>W2012236077
WBYN01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-543 [WBYN]
319386
319461
+
Val
TAC
[ENA]
¡û
>W2012236079
WBYN01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-543 [WBYN]
319741
319816
+
Val
TAC
[ENA]
¡û
>W2012236126
WBYO01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-564 [WBYO]
263514
263589
+
Val
TAC
[ENA]
¡û
>W2012236128
WBYO01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-564 [WBYO]
263722
263797
+
Val
TAC
[ENA]
¡û
>W2012236130
WBYO01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-564 [WBYO]
264077
264152
+
Val
TAC
[ENA]
¡û
>W2012236186
WBYP01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-579 [WBYP]
181890
181815
-
Val
TAC
[ENA]
¡û
>W2012236188
WBYP01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-579 [WBYP]
181537
181462
-
Val
TAC
[ENA]
¡û
>W2012236190
WBYP01000001
Gammaproteobacteria
Marinobacterium sp. xm-d-579 [WBYP]
181182
181107
-
Val
TAC
[ENA]
¡û
>W2012236231
WBYQ01000001
Gammaproteobacteria
Marinobacterium sp. xm-g-48 [WBYQ]
582063
582138
+
Val
TAC
[ENA]
¡û
>W2012236233
WBYQ01000001
Gammaproteobacteria
Marinobacterium sp. xm-g-48 [WBYQ]
582271
582346
+
Val
TAC
[ENA]
¡û
>W2012236235
WBYQ01000001
Gammaproteobacteria
Marinobacterium sp. xm-g-48 [WBYQ]
582626
582701
+
Val
TAC
[ENA]
¡û
>W2012236289
WBYR01000002
Gammaproteobacteria
Marinobacterium sp. xm-g-59 [WBYR]
74030
73955
-
Val
TAC
[ENA]
¡û
>W2012236291
WBYR01000002
Gammaproteobacteria
Marinobacterium sp. xm-g-59 [WBYR]
73675
73600
-
Val
TAC
[ENA]
¡û
>W2012236330
WBYS01000001
Gammaproteobacteria
Marinobacterium sp. xm-m-312 [WBYS]
310306
310381
+
Val
TAC
[ENA]
¡û
>W2012236332
WBYS01000001
Gammaproteobacteria
Marinobacterium sp. xm-m-312 [WBYS]
310514
310589
+
Val
TAC
[ENA]
¡û
>W2012236334
WBYS01000001
Gammaproteobacteria
Marinobacterium sp. xm-m-312 [WBYS]
310869
310944
+
Val
TAC
[ENA]
¡û
>W2012236402
WBYT01000003
Gammaproteobacteria
Marinobacterium sp. xm-m-383 [WBYT]
57897
57822
-
Val
TAC
[ENA]
¡û
>W2012236404
WBYT01000003
Gammaproteobacteria
Marinobacterium sp. xm-m-383 [WBYT]
57542
57467
-
Val
TAC
[ENA]
¡û
>W2012236438
WBYU01000002
Gammaproteobacteria
Marinobacterium sp. xm-v-233 [WBYU]
186059
186134
+
Val
TAC
[ENA]
¡û
>W2012236440
WBYU01000002
Gammaproteobacteria
Marinobacterium sp. xm-v-233 [WBYU]
186267
186342
+
Val
TAC
[ENA]
¡û
>W2012236442
WBYU01000002
Gammaproteobacteria
Marinobacterium sp. xm-v-233 [WBYU]
186622
186697
+
Val
TAC
[ENA]
¡û
>W2012236500
WBYV01000003
Gammaproteobacteria
Marinobacterium sp. xm-v-242 [WBYV]
58105
58030
-
Val
TAC
[ENA]
¡û
>W2012236502
WBYV01000003
Gammaproteobacteria
Marinobacterium sp. xm-v-242 [WBYV]
57897
57822
-
Val
TAC
[ENA]
¡û
>W2012236504
WBYV01000003
Gammaproteobacteria
Marinobacterium sp. xm-v-242 [WBYV]
57542
57467
-
Val
TAC
[ENA]
¡û
>W2110026476
BMIJ01000004
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
309851
309776
-
Val
TAC
[ENA]
¡û
>W2110026478
BMIJ01000004
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
309556
309481
-
Val
TAC
[ENA]
¡û
>W2110026480
BMIJ01000004
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
309256
309181
-
Val
TAC
[ENA]
¡û
>W2110030727
BMLT01000004
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
290686
290611
-
Val
TAC
[ENA]
¡û
>W2110030729
BMLT01000004
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
290309
290234
-
Val
TAC
[ENA]
¡û
>W2110030731
BMLT01000004
Gammaproteobacteria
Marinobacterium nitratireducens CGMCC 1.7286 [BMLT]
290020
289945
-
Val
TAC
[ENA]
¡û
>W2110269379
JACVEW010000019
Gammaproteobacteria
Marinobacterium alkalitolerans AK62 [JACVEW]
68534
68459
-
Val
TAC
[ENA]
¡û
>W2110639264
JAHQZT010000002
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
224027
223952
-
Val
TAC
[ENA]
¡û
>W2110639319
JAHQZT010000082
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
161
236
+
Val
TAC
[ENA]
¡û
>W2110639321
JAHQZT010000082
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
367
442
+
Val
TAC
[ENA]
¡û
>C211032109
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2506213
2506138
-
Val
TAC
-
¡û
>C211032111
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2506007
2505932
-
Val
TAC
-
¡û
>C211032113
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2505748
2505673
-
Val
TAC
-
¡û
>C231313117
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2065509
2065434
-
Val
TAC
-
¡û
>C231313119
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2065305
2065230
-
Val
TAC
-
¡û
>C231313121
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2065101
2065026
-
Val
TAC
-
¡û
>C231313123
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2064897
2064822
-
Val
TAC
-
¡û
>C231313125
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2064611
2064536
-
Val
TAC
-
¡û
>W11170429
AFPL01000055
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
58
133
+
Val
TAC
[ENA]
¡û
>ENV004936
EF190084
Environmental sample from ENV division of INSDC
933
1010
+
Val
TAC
[ENA]
>W1710533735
FNRJ01000002
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
352845
352770
-
Val
TAC
[ENA]
¡û
>W1710539696
FNVQ01000001
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
269991
270066
+
Val
TAC
[ENA]
¡û
>W1710539698
FNVQ01000001
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
270198
270273
+
Val
TAC
[ENA]
¡û
>W1710539700
FNVQ01000001
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
270405
270480
+
Val
TAC
[ENA]
¡û
>W1710596363
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
310268
310193
-
Val
TAC
[ENA]
¡û
>W1710596365
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
309983
309908
-
Val
TAC
[ENA]
¡û
>W1710596367
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
309779
309704
-
Val
TAC
[ENA]
¡û
>W1710596369
FTMN01000002
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
309574
309499
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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