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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.514009 (92 seq.)
>W1711126690
LUPF01000006
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
6334
6261
-
Arg
CCT
[ENA]
¡û
>W1711126733
LUPG01000151
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
2245
2172
-
Arg
CCT
[ENA]
¡û
>W1711126790
LUPH01000284
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
3490
3417
-
Arg
CCT
[ENA]
¡û
>W1711126821
LUPI01000042
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
4521
4448
-
Arg
CCT
[ENA]
¡û
>W1711126842
LUPJ01000033
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
167
94
-
Arg
CCT
[ENA]
¡û
>W1711126911
LUPK01000054
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
158552
158625
+
Arg
CCT
[ENA]
¡û
>W1711126957
LUPL01000231
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
4561
4488
-
Arg
CCT
[ENA]
¡û
>W1711126975
LUPM01000123
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
2910
2983
+
Arg
CCT
[ENA]
¡û
>W1711127028
LUPN01000444
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
1193
1266
+
Arg
CCT
[ENA]
¡û
>W1711127034
LUPO01000001
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
6251
6178
-
Arg
CCT
[ENA]
¡û
>W1711127084
LUPP01000026
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
157707
157780
+
Arg
CCT
[ENA]
¡û
>W1711127127
LUPQ01000046
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
6095
6168
+
Arg
CCT
[ENA]
¡û
>W131227890
AUFN01000010
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
1209494
1209569
+
Arg
CCT
[ENA]
¡û
>W131229391
AUGT01000017
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
179348
179273
-
Arg
CCT
[ENA]
¡û
>WENV180000036
CZKA01000040
[CZKA] metagenome; liquid mineral medium
17426
17499
+
Arg
CCT
[ENA]
¡û
>WENV180272770
OBEQ012415211
[OBEQ] groundwater metagenome; groundwater
302
228
-
Arg
CCT
[ENA]
¡û
>WENV180292674
OBIV01565281
[OBIV] soil metagenome; Clay
185
259
+
Arg
CCT
[ENA]
¡û
>WENV170229654
CEQG01145056
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2004
2077
+
Arg
CCT
[ENA]
¡û
>WENV170372389
CETS01091131
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
236
161
-
Arg
CCT
[ENA]
¡û
>WENV170552345
CXWJ01057188
[CXWJ] wastewater metagenome; activated sludge
9987
10060
+
Arg
CCT
[ENA]
¡û
>WENV170727485
LULE01000178
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
6249
6176
-
Arg
CCT
[ENA]
¡û
>WENV170727925
LULE01004642
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
1727
1802
+
Arg
CCT
[ENA]
¡û
>WENV170728633
LULF01000012
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
6251
6178
-
Arg
CCT
[ENA]
¡û
>WENV170730081
LULG01011264
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1073
1146
+
Arg
CCT
[ENA]
¡û
>WENV170730701
LULH01001937
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
1193
1266
+
Arg
CCT
[ENA]
¡û
>WENV170731683
LULI01002034
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
2910
2983
+
Arg
CCT
[ENA]
¡û
>WENV170734229
LULK01002543
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
4561
4488
-
Arg
CCT
[ENA]
¡û
>WENV170735093
LULL01000005
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
158552
158625
+
Arg
CCT
[ENA]
¡û
>WENV170737125
LULN01003097
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
167
94
-
Arg
CCT
[ENA]
¡û
>WENV170737480
LULO01000235
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
4521
4448
-
Arg
CCT
[ENA]
¡û
>WENV170738902
LULP01006910
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
1395
1468
+
Arg
CCT
[ENA]
¡û
>WENV170739313
LULQ01000177
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
3490
3417
-
Arg
CCT
[ENA]
¡û
>WENV170741683
LULT01001211
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
2245
2172
-
Arg
CCT
[ENA]
¡û
>WENV170742256
LULU01007034
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
315
388
+
Arg
CCT
[ENA]
¡û
>WENV170743448
LULW01000084
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
60588
60661
+
Arg
CCT
[ENA]
¡û
>WENV170758872
LUMS01000103
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
11918
11991
+
Arg
CCT
[ENA]
¡û
>WENV170760808
LUMU01000238
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
6095
6168
+
Arg
CCT
[ENA]
¡û
>WENV170761868
LUMW01000027
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
39515
39588
+
Arg
CCT
[ENA]
¡û
>C191158839
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
1839258
1839331
+
Arg
CCT
-
¡û
>W141564533
JIAV01000020
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
134301
134226
-
Arg
CCT
[ENA]
¡û
>W141775219
JOJN01000011
Actinomycetota
Nocardioides aequoreus [JOJN]
16245
16320
+
Arg
CCT
[ENA]
¡û
>W1810539919
QDGZ01000009
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
66248
66322
+
Arg
CCT
[ENA]
¡û
>W2010309720
CABWLN010000041
Actinomycetota
Nocardioides sp. AX2bis [CABWLN]
45706
45633
-
Arg
CCT
[ENA]
¡û
>W2010521347
JAANMS010000065
Actinomycetota
Nocardioides sp. IC4_145 [JAANMS]
16780
16706
-
Arg
CCT
[ENA]
¡û
>W2010603400
JABJRA010000015
Actinomycetota
Nocardioides sp. zg-DK7169 [JABJRA]
73189
73114
-
Arg
CCT
[ENA]
¡û
>W2010668234
JACBZI010000001
Actinomycetota
Nocardioides marinus DSM 18248 [JACBZI]
418665
418590
-
Arg
CCT
[ENA]
¡û
>W2010669157
JACCAD010000001
Actinomycetota
Nocardioides lianchengensis CGMCC 4.6858 [JACCAD]
2892933
2893008
+
Arg
CCT
[ENA]
¡û
>W2010670684
JACCBE010000001
Actinomycetota
Nocardioides marinisabuli DSM 18965 [JACCBE]
708034
708108
+
Arg
CCT
[ENA]
¡û
>W2011546743
SDKM01000019
Actinomycetota
Nocardioides sp. 130 [SDKM]
43759
43685
-
Arg
CCT
[ENA]
¡û
>W2012049830
VIYJ01000003
Actinomycetota
Nocardioides rubriscoriae DSM 23986 [VIYJ]
518727
518652
-
Arg
CCT
[ENA]
¡û
>W2012369158
WLCI01000002
Actinomycetota
Nocardioides sp. zg-579 [WLCI]
386699
386624
-
Arg
CCT
[ENA]
¡û
>W2012369222
WLCJ01000010
Actinomycetota
Nocardioides sp. zg-578 [WLCJ]
150873
150948
+
Arg
CCT
[ENA]
¡û
>W2012433962
WTFR01000002
Actinomycetota
Nocardioides sp. ZJ1313 [WTFR]
293853
293778
-
Arg
CCT
[ENA]
¡û
>W2012433998
WTFS01000001
Actinomycetota
Nocardioides sp. ZJ1307 [WTFS]
839653
839728
+
Arg
CCT
[ENA]
¡û
>W2012442222
WUEK01000013
Actinomycetota
Nocardioides sp. YIM 123512 [WUEK]
138827
138901
+
Arg
CCT
[ENA]
¡û
>W2110031975
BMMR01000001
Actinomycetota
Nocardioides deserti CGMCC 4.7183 [BMMR]
1643858
1643932
+
Arg
CCT
[ENA]
¡û
>W2110201542
JACDTV010000005
Actinomycetota
Nocardioides salarius DSM 18239 [JACDTV]
185267
185341
+
Arg
CCT
[ENA]
¡û
>W2110221013
JACJGL010000014
Actinomycetota
Nocardioides dongkuii 406 [JACJGL]
23048
23123
+
Arg
CCT
[ENA]
¡û
>W2110239646
JACMYC010000007
Actinomycetota
Nocardioides deserti SC8A-24 [JACMYC]
147564
147638
+
Arg
CCT
[ENA]
¡û
>W2110266335
JACUWQ010000010
Actinomycetota
Nocardioides sp. zg-578 [JACUWQ]
150873
150948
+
Arg
CCT
[ENA]
¡û
>W2110293196
JACYXZ010000004
Actinomycetota
Nocardioides sp. MJB4 [JACYXZ]
13243
13316
+
Arg
CCT
[ENA]
¡û
>W2110303593
JADCLM010000005
Actinomycetota
Nocardioides salarius DSM 18239 [JADCLM]
185267
185341
+
Arg
CCT
[ENA]
¡û
>W2110441151
JAERJA010000004
Actinomycetota
Nocardioides sp. DJM-14 [JAERJA]
289525
289451
-
Arg
CCT
[ENA]
¡û
>W2110458404
JAFBBZ010000001
Actinomycetota
Nocardioides salarius DSM 18239 [JAFBBZ]
2841996
2841922
-
Arg
CCT
[ENA]
¡û
>W2110493793
JAFFJT010000025
Actinomycetota
Nocardioides sp. SYSU D00038 [JAFFJT]
51738
51812
+
Arg
CCT
[ENA]
¡û
>C201266429
CP053660
Actinomycetota
Nocardioides sp. zg-579 [CP053660]
658954
658879
-
Arg
CCT
-
¡û
>C211125556
CP059903
Actinomycetota
Nocardioides sp. S-713 [CP059903]
829253
829178
-
Arg
CCT
-
¡û
>C211153020
CP061769
Actinomycetota
Nocardioides sp. ZJ1313 [CP061769]
558689
558764
+
Arg
CCT
-
¡û
>C211336936
CP075371
Actinomycetota
Nocardioides aquaticus KCTC 9944 [CP075371]
4106612
4106687
+
Arg
CCT
-
¡û
>C211342154
CP076053
Actinomycetota
Nocardioidaceae bacterium TYQ2 [CP076053]
2299842
2299767
-
Arg
CCT
-
¡û
>C211399656
CP082922
Actinomycetota
Nocardioides rotundus MCCC 1A10561 [CP082922]
485594
485669
+
Arg
CCT
-
¡û
>C231252276
CP088262
Actinomycetota
Nocardioides sp. cx-173 [CP088262]
3781715
3781790
+
Arg
CCT
-
¡û
>C241176376
CP059163
Actinomycetota
Nocardioides marinisabuli DSM 18965 [CP059163]
946041
946115
+
Arg
CCT
-
¡û
>C241176461
CP059164
Actinomycetota
Nocardioides ungokensis LMG 28591 [CP059164]
751480
751406
-
Arg
CCT
-
¡û
>C241221142
CP113431
Actinomycetota
Nocardioides sp. Arc9.136 [CP113431]
759608
759534
-
Arg
CCT
-
¡û
>W2310010942
BNET01000003
Actinomycetota
Nocardioides sp. OK12 [BNET]
188718
188792
+
Arg
CCT
[ENA]
¡û
>C161082855
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
695959
696034
+
Arg
CCT
[Ensembl]
¡û
>W1610051382
BBGV01000015
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
8576
8501
-
Arg
CCT
[ENA]
¡û
>W1610937804
LUPF01000006
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
6334
6261
-
Arg
CCT
[ENA]
¡û
>W1610937847
LUPG01000151
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
2245
2172
-
Arg
CCT
[ENA]
¡û
>W1610937904
LUPH01000284
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
3490
3417
-
Arg
CCT
[ENA]
¡û
>W1610937935
LUPI01000042
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
4521
4448
-
Arg
CCT
[ENA]
¡û
>W1610937956
LUPJ01000033
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
167
94
-
Arg
CCT
[ENA]
¡û
>W1610938025
LUPK01000054
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
158552
158625
+
Arg
CCT
[ENA]
¡û
>W1610938071
LUPL01000231
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
4561
4488
-
Arg
CCT
[ENA]
¡û
>W1610938089
LUPM01000123
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
2910
2983
+
Arg
CCT
[ENA]
¡û
>W1610938142
LUPN01000444
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
1193
1266
+
Arg
CCT
[ENA]
¡û
>W1610938148
LUPO01000001
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
6251
6178
-
Arg
CCT
[ENA]
¡û
>W1610938198
LUPP01000026
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
157707
157780
+
Arg
CCT
[ENA]
¡û
>W1610938241
LUPQ01000046
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
6095
6168
+
Arg
CCT
[ENA]
¡û
>W1710047760
BBGV01000015
Actinomycetota
Nocardioides pyridinolyticus JCM 10369 [BBGV]
8576
8501
-
Arg
CCT
[ENA]
¡û
>W1710512559
FMZM01000013
Actinomycetota
Nocardioides lianchengensis [FMZM]
9670
9595
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK