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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51437 (67 seq.)
>W1711128640
LUTD01000023
Gammaproteobacteria
Lonsdalea populi subsp. populi [LUTD]
33905
33818
-
Leu
GAG
[ENA]
¡û
>W1711128709
LUTM01000017
Gammaproteobacteria
Lonsdalea populi subsp. populi [LUTM]
25063
25150
+
Leu
GAG
[ENA]
¡û
>W1711128752
LUTN01000010
Gammaproteobacteria
Lonsdalea britannica subsp. britannica [LUTN]
72247
72334
+
Leu
GAG
[ENA]
¡û
>W1711128794
LUTO01000013
Gammaproteobacteria
Lonsdalea britannica subsp. britannica [LUTO]
29121
29208
+
Leu
GAG
[ENA]
¡û
>W1711128856
LUTP01000013
Gammaproteobacteria
Lonsdalea iberica subsp. iberica [LUTP]
33907
33820
-
Leu
GAG
[ENA]
¡û
>W1711128908
LUTQ01000014
Gammaproteobacteria
Lonsdalea iberica subsp. iberica [LUTQ]
25748
25835
+
Leu
GAG
[ENA]
¡û
>WENV181228837
OFEI01000003
[OFEI] insect metagenome; insect
72811
72724
-
Leu
GAG
[ENA]
¡û
>WENV181231986
OFEL01000001
[OFEL] insect metagenome; insect
43413
43500
+
Leu
GAG
[ENA]
¡û
>WENV170000384
AEWW01022855
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
118
205
+
Leu
GAG
[ENA]
¡û
>C191023281
CP023009
Gammaproteobacteria
Lonsdalea britannica 477 [CP023009]
1691140
1691227
+
Leu
GAG
-
¡û
>W141565234
JIBO01000004
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBO]
170829
170916
+
Leu
GAG
[ENA]
¡û
>W141565300
JIBP01000002
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBP]
61268
61355
+
Leu
GAG
[ENA]
¡û
>W141565401
JIBQ01000005
Gammaproteobacteria
Lonsdalea quercina subsp. quercina [JIBQ]
382127
382214
+
Leu
GAG
[ENA]
¡û
>W1910643482
LUSP01000053
Gammaproteobacteria
Lonsdalea quercina CFCC 11059 [LUSP]
14356
14443
+
Leu
GAG
[ENA]
¡û
>W1910643540
LUSQ01000076
Gammaproteobacteria
Lonsdalea quercina CFCC 13731 [LUSQ]
147
60
-
Leu
GAG
[ENA]
¡û
>W1910643599
LUSR01000070
Gammaproteobacteria
Lonsdalea populi CFCC 12786 [LUSR]
14353
14440
+
Leu
GAG
[ENA]
¡û
>W1910643635
LUSS01000053
Gammaproteobacteria
Lonsdalea populi CFCC 12252 [LUSS]
14092
14005
-
Leu
GAG
[ENA]
¡û
>W1910643679
LUST01000010
Gammaproteobacteria
Lonsdalea populi CFCC 13912 [LUST]
57681
57768
+
Leu
GAG
[ENA]
¡û
>W1910643750
LUSU01000013
Gammaproteobacteria
Lonsdalea populi CFCC 13097 [LUSU]
85812
85899
+
Leu
GAG
[ENA]
¡û
>W1910643790
LUSV01000012
Gammaproteobacteria
Lonsdalea populi CFCC 11200 [LUSV]
29573
29660
+
Leu
GAG
[ENA]
¡û
>W1910643858
LUSW01000014
Gammaproteobacteria
Lonsdalea populi CFCC 12721 [LUSW]
33870
33783
-
Leu
GAG
[ENA]
¡û
>W1910643919
LUSX01000010
Gammaproteobacteria
Lonsdalea populi CFCC 11265 [LUSX]
57676
57763
+
Leu
GAG
[ENA]
¡û
>W1910643978
LUSY01000028
Gammaproteobacteria
Lonsdalea populi CFCC 11264 [LUSY]
14081
13994
-
Leu
GAG
[ENA]
¡û
>W1910644033
LUSZ01000016
Gammaproteobacteria
Lonsdalea populi CFCC 11263 [LUSZ]
29667
29754
+
Leu
GAG
[ENA]
¡û
>W1910644066
LUTA01000001
Gammaproteobacteria
Lonsdalea populi CFCC 13280 [LUTA]
34024
33937
-
Leu
GAG
[ENA]
¡û
>W1910644128
LUTB01000006
Gammaproteobacteria
Lonsdalea populi CFCC 12509 [LUTB]
14090
14003
-
Leu
GAG
[ENA]
¡û
>W1910644203
LUTC01000019
Gammaproteobacteria
Lonsdalea populi CFCC 11379 [LUTC]
14361
14448
+
Leu
GAG
[ENA]
¡û
>W1910644249
LUTE01000019
Gammaproteobacteria
Lonsdalea populi CFCC 11196 [LUTE]
33992
33905
-
Leu
GAG
[ENA]
¡û
>W1910644318
LUTF01000026
Gammaproteobacteria
Lonsdalea populi CFCC 11199 [LUTF]
33905
33818
-
Leu
GAG
[ENA]
¡û
>W1910644376
LUTG01000079
Gammaproteobacteria
Lonsdalea populi CFCC 13872 [LUTG]
6356
6443
+
Leu
GAG
[ENA]
¡û
>W1910644433
LUTH01000057
Gammaproteobacteria
Lonsdalea populi CFCC 13800 [LUTH]
14365
14452
+
Leu
GAG
[ENA]
¡û
>W1910644461
LUTI01000015
Gammaproteobacteria
Lonsdalea populi CFCC 13122 [LUTI]
14365
14452
+
Leu
GAG
[ENA]
¡û
>W1910644547
LUTJ01000035
Gammaproteobacteria
Lonsdalea populi CFCC 13123 [LUTJ]
14108
14021
-
Leu
GAG
[ENA]
¡û
>W1910644584
LUTK01000029
Gammaproteobacteria
Lonsdalea populi CFCC 13126 [LUTK]
33880
33793
-
Leu
GAG
[ENA]
¡û
>W1910644664
LUTL01000086
Gammaproteobacteria
Lonsdalea populi CFCC 13124 [LUTL]
225
138
-
Leu
GAG
[ENA]
¡û
>W2010787418
LUSP01000053
Gammaproteobacteria
Lonsdalea quercina CFCC 11059 [LUSP]
14356
14443
+
Leu
GAG
[ENA]
¡û
>W2010787476
LUSQ01000076
Gammaproteobacteria
Lonsdalea quercina CFCC 13731 [LUSQ]
147
60
-
Leu
GAG
[ENA]
¡û
>W2010787535
LUSR01000070
Gammaproteobacteria
Lonsdalea populi CFCC 12786 [LUSR]
14353
14440
+
Leu
GAG
[ENA]
¡û
>W2010787571
LUSS01000053
Gammaproteobacteria
Lonsdalea populi CFCC 12252 [LUSS]
14092
14005
-
Leu
GAG
[ENA]
¡û
>W2010787615
LUST01000010
Gammaproteobacteria
Lonsdalea populi CFCC 13912 [LUST]
57681
57768
+
Leu
GAG
[ENA]
¡û
>W2010787686
LUSU01000013
Gammaproteobacteria
Lonsdalea populi CFCC 13097 [LUSU]
85812
85899
+
Leu
GAG
[ENA]
¡û
>W2010787726
LUSV01000012
Gammaproteobacteria
Lonsdalea populi CFCC 11200 [LUSV]
29573
29660
+
Leu
GAG
[ENA]
¡û
>W2010787794
LUSW01000014
Gammaproteobacteria
Lonsdalea populi CFCC 12721 [LUSW]
33870
33783
-
Leu
GAG
[ENA]
¡û
>W2010787855
LUSX01000010
Gammaproteobacteria
Lonsdalea populi CFCC 11265 [LUSX]
57676
57763
+
Leu
GAG
[ENA]
¡û
>W2010787914
LUSY01000028
Gammaproteobacteria
Lonsdalea populi CFCC 11264 [LUSY]
14081
13994
-
Leu
GAG
[ENA]
¡û
>W2010787969
LUSZ01000016
Gammaproteobacteria
Lonsdalea populi CFCC 11263 [LUSZ]
29667
29754
+
Leu
GAG
[ENA]
¡û
>W2010788002
LUTA01000001
Gammaproteobacteria
Lonsdalea populi CFCC 13280 [LUTA]
34024
33937
-
Leu
GAG
[ENA]
¡û
>W2010788064
LUTB01000006
Gammaproteobacteria
Lonsdalea populi CFCC 12509 [LUTB]
14090
14003
-
Leu
GAG
[ENA]
¡û
>W2010788139
LUTC01000019
Gammaproteobacteria
Lonsdalea populi CFCC 11379 [LUTC]
14361
14448
+
Leu
GAG
[ENA]
¡û
>W2010788185
LUTE01000019
Gammaproteobacteria
Lonsdalea populi CFCC 11196 [LUTE]
33992
33905
-
Leu
GAG
[ENA]
¡û
>W2010788254
LUTF01000026
Gammaproteobacteria
Lonsdalea populi CFCC 11199 [LUTF]
33905
33818
-
Leu
GAG
[ENA]
¡û
>W2010788312
LUTG01000079
Gammaproteobacteria
Lonsdalea populi CFCC 13872 [LUTG]
6356
6443
+
Leu
GAG
[ENA]
¡û
>W2010788369
LUTH01000057
Gammaproteobacteria
Lonsdalea populi CFCC 13800 [LUTH]
14365
14452
+
Leu
GAG
[ENA]
¡û
>W2010788397
LUTI01000015
Gammaproteobacteria
Lonsdalea populi CFCC 13122 [LUTI]
14365
14452
+
Leu
GAG
[ENA]
¡û
>W2010788483
LUTJ01000035
Gammaproteobacteria
Lonsdalea populi CFCC 13123 [LUTJ]
14108
14021
-
Leu
GAG
[ENA]
¡û
>W2010788520
LUTK01000029
Gammaproteobacteria
Lonsdalea populi CFCC 13126 [LUTK]
33880
33793
-
Leu
GAG
[ENA]
¡û
>W2010788600
LUTL01000086
Gammaproteobacteria
Lonsdalea populi CFCC 13124 [LUTL]
225
138
-
Leu
GAG
[ENA]
¡û
>W2011441530
RJUH01000002
Gammaproteobacteria
Lonsdalea populi HEZEL_2_1_2 [RJUH]
208917
208830
-
Leu
GAG
[ENA]
¡û
>W2011441602
RJUI01000005
Gammaproteobacteria
Lonsdalea populi L2-3 [RJUI]
57778
57865
+
Leu
GAG
[ENA]
¡û
>W2011441666
RJUJ01000002
Gammaproteobacteria
Lonsdalea populi L6_4B [RJUJ]
183125
183038
-
Leu
GAG
[ENA]
¡û
>W2110169345
JABBFP010000001
Gammaproteobacteria
Rosenbergiella collisarenosi 8.8A [JABBFP]
130999
131086
+
Leu
GAG
[ENA]
¡û
>C211206162
CP065419
Gammaproteobacteria
Salmonella enterica LHICA_E1 [CP065419]
532349
532436
+
Leu
GAG
-
¡û
>C211208422
CP065534
Gammaproteobacteria
Lonsdalea populi N-5-1 [CP065534]
3206187
3206100
-
Leu
GAG
-
¡û
>C231128769
CP072856
Gammaproteobacteria
Lonsdalea populi N-5-1 [CP072856]
3634093
3634006
-
Leu
GAG
-
¡û
>C241295343
CP130649
Gammaproteobacteria
Tatumella ptyseos Sample4_4 [CP130649]
2788695
2788608
-
Leu
GAG
-
¡û
>WENV11100742
AEWW01022855
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
118
205
+
Leu
GAG
[ENA]
¡û
>W1710532950
FNQS01000007
Gammaproteobacteria
Lonsdalea quercina [FNQS]
217659
217572
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK