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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.514876 (55 seq.)
>W1711903055
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
118065
117990
-
Phe
GAA
[ENA]
¡û
>W1711903067
MZGX01000015
Bacillota
Ruminiclostridium hungatei [MZGX]
1963
1888
-
Phe
GAA
[ENA]
¡û
>W131098518
AORV01000021
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
111990
112065
+
Phe
GAA
[ENA]
¡û
>W131098545
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
37113
37038
-
Phe
GAA
[ENA]
¡û
>W131204204
ATAY01000020
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
340101
340026
-
Phe
GAA
[ENA]
¡û
>W131204242
ATAY01000094
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
136960
136885
-
Phe
GAA
[ENA]
¡û
>w020734
AAVC01000020
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
54434
54357
-
Phe
GAA
[ENA]
¡û
>WENV181657072
OGOC01012571
[OGOC] human gut metagenome; faeces
173
247
+
Phe
GAA
[ENA]
¡û
>WENV182003597
OHBD01000351
[OHBD] human gut metagenome; feces
11275
11201
-
Phe
GAA
[ENA]
¡û
>WENV182087558
OHGW01007108
[OHGW] human gut metagenome; feces
244
318
+
Phe
GAA
[ENA]
¡û
>WENV182101437
OHHU01000169
[OHHU] human gut metagenome; feces
489
415
-
Phe
GAA
[ENA]
¡û
>W141212228
AZQP01000004
Bacillota
Fervidicella metallireducens AeB [AZQP]
11447
11522
+
Phe
GAA
[ENA]
¡û
>W141212261
AZQP01000035
Bacillota
Fervidicella metallireducens AeB [AZQP]
29451
29376
-
Phe
GAA
[ENA]
¡û
>WENV182192146
OHOZ01001511
[OHOZ] human gut metagenome; feces
8030
8104
+
Phe
GAA
[ENA]
¡û
>WENV182522056
OIWS01000035
[OIWS] human gut metagenome; faeces
45982
46056
+
Phe
GAA
[ENA]
¡û
>WENV182527919
OIWU01001015
[OIWU] human gut metagenome; faeces
173
247
+
Phe
GAA
[ENA]
¡û
>WENV182537888
OIXH01022995
[OIXH] human gut metagenome; faeces
2269
2195
-
Phe
GAA
[ENA]
¡û
>W141279273
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
1307196
1307121
-
Phe
GAA
[ENA]
¡û
>W141279294
JAGE01000002
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
233547
233472
-
Phe
GAA
[ENA]
¡û
>WENV182859668
OKOP01000285
[OKOP] human gut metagenome; human gut
840
915
+
Phe
GAA
[ENA]
¡û
>WENV182870768
OKRU01003569
[OKRU] human gut metagenome; faeces
12060
11986
-
Phe
GAA
[ENA]
¡û
>WENV182894596
OKSL01009811
[OKSL] human gut metagenome; feces
839
765
-
Phe
GAA
[ENA]
¡û
>WENV182919521
OKTX01022117
[OKTX] human gut metagenome; feces
175
249
+
Phe
GAA
[ENA]
¡û
>WENV182959896
OKWJ01000819
[OKWJ] human gut metagenome; human gut
66
140
+
Phe
GAA
[ENA]
¡û
>WENV183038267
OLGB01000273
[OLGB] human gut metagenome; faeces
30749
30675
-
Phe
GAA
[ENA]
¡û
>WENV170561077
CZCA01002659
[CZCA] anaerobic digester metagenome; anaerobic digester
446
521
+
Phe
GAA
[ENA]
¡û
>WENV170562615
CZCB01003892
[CZCB] anaerobic digester metagenome; anaerobic digester
2568
2493
-
Phe
GAA
[ENA]
¡û
>WENV170722607
LSQX01235319
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
163
238
+
Phe
GAA
[ENA]
¡û
>WENV170777968
LXOW01343283
[LXOW] bovine gut metagenome; Cow rumen
8327
8402
+
Phe
GAA
[ENA]
¡û
>WENV170969077
MTKW01019949
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
477
402
-
Phe
GAA
[ENA]
¡û
>W141561084
JHYD01000024
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
104045
104120
+
Phe
GAA
[ENA]
¡û
>W141561099
JHYD01000056
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
19894
19819
-
Phe
GAA
[ENA]
¡û
>C09103068
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
2111073
2111148
+
Phe
GAA
[Ensembl]
¡û
>C09103089
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3456056
3455981
-
Phe
GAA
[Ensembl]
¡û
>W1810677416
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
56400
56325
-
Phe
GAA
[ENA]
¡û
>W1810759855
QPJT01000001
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
236226
236301
+
Phe
GAA
[ENA]
¡û
>W2011480017
RQSR01000001
Bacillota
Ruminiclostridium sp. MA18 [RQSR]
550108
550183
+
Phe
GAA
[ENA]
¡û
>W2011480047
RQSR01000005
Bacillota
Ruminiclostridium sp. MA18 [RQSR]
86173
86248
+
Phe
GAA
[ENA]
¡û
>W2011654215
SOAZ01000006
Bacillota
Fonticella tunisiensis DSM 24455 [SOAZ]
1337
1262
-
Phe
GAA
[ENA]
¡û
>W2011654223
SOAZ01000009
Bacillota
Fonticella tunisiensis DSM 24455 [SOAZ]
64249
64174
-
Phe
GAA
[ENA]
¡û
>W10105861
ACXX01000003
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
62567
62644
+
Phe
GAA
[ENA]
¡û
>W10105880
ACXX01000008
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
29772
29697
-
Phe
GAA
[ENA]
¡û
>C211145701
CP061336
Bacillota
Ruminiclostridium herbifermentans MA18 [CP061336]
726152
726227
+
Phe
GAA
-
¡û
>C211145738
CP061336
Bacillota
Ruminiclostridium herbifermentans MA18 [CP061336]
2254430
2254355
-
Phe
GAA
-
¡û
>C231624779
CP119677
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [CP119677]
2754451
2754526
+
Phe
GAA
-
¡û
>C231624799
CP119677
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [CP119677]
4454218
4454143
-
Phe
GAA
-
¡û
>W11108192
ACXX02000003
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
291598
291523
-
Phe
GAA
[ENA]
¡û
>W11108224
ACXX02000014
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
108146
108221
+
Phe
GAA
[ENA]
¡û
>W1511633416
LDJB01000002
Bacillota
Peptococcaceae bacterium 1109 [LDJB]
397053
396978
-
Phe
GAA
[ENA]
¡û
>C121009836
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
2410729
2410804
+
Phe
GAA
[Ensembl]
¡û
>C121009856
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
4138228
4138153
-
Phe
GAA
[Ensembl]
¡û
>W1610043736
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49429
49504
+
Phe
GAA
[ENA]
¡û
>W1610043763
BBAA01000025
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
6667
6592
-
Phe
GAA
[ENA]
¡û
>W1710040896
BBAA01000002
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
49429
49504
+
Phe
GAA
[ENA]
¡û
>W1710040923
BBAA01000025
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
6667
6592
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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