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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.514986 (53 seq.)
>W1710943857
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
97696
97621
-
Val
TAC
[ENA]
¡û
>W1711029722
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
97696
97621
-
Val
TAC
[ENA]
¡û
>W1711126105
LUNZ01000032
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
876
951
+
Val
TAC
[ENA]
¡û
>W1711126127
LUOA01000017
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
36381
36306
-
Val
TAC
[ENA]
¡û
>W131223251
AUBY01000006
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
137480
137405
-
Val
TAC
[ENA]
¡û
>W131223253
AUBY01000006
Gammaproteobacteria
Aliagarivorans marinus DSM 23064 [AUBY]
137283
137208
-
Val
TAC
[ENA]
¡û
>W131239253
BANL01000026
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
82942
83017
+
Val
TAC
[ENA]
¡û
>C011022
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
1906022
1906097
+
Val
TAC
[Ensembl]
¡û
>WENV170112402
CEGE01005175
[CEGE] microbial mat metagenome; grass silage
139
64
-
Val
TAC
[ENA]
¡û
>WENV170112683
CEGF01012714
[CEGF] microbial mat metagenome; grass silage
1037
1112
+
Val
TAC
[ENA]
¡û
>WENV170136143
CENV01005296
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
36512
36437
-
Val
TAC
[ENA]
¡û
>WENV170283355
CERU01002254
[CERU] marine metagenome genome assembly TARA_065_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1118
1043
-
Val
TAC
[ENA]
¡û
>WENV170691894
LFUG01001422
[LFUG] hypersaline lake metagenome; virus filtrate of water collected from the Namib Desert Eisfeld playa
809
884
+
Val
TAC
[ENA]
¡û
>WENV170739939
LULR01000038
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
36381
36306
-
Val
TAC
[ENA]
¡û
>WENV170744314
LULX01000229
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
876
951
+
Val
TAC
[ENA]
¡û
>WENV170884998
MDTC01194140
[MDTC] marine metagenome; seawater
5810
5735
-
Val
TAC
[ENA]
¡û
>W1911585578
PIQA01000001
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
854005
854080
+
Val
TAC
[ENA]
¡û
>W1911585677
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
605365
605440
+
Val
TAC
[ENA]
¡û
>W1911585678
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
605477
605552
+
Val
TAC
[ENA]
¡û
>W1810609591
QGUA01000007
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
142434
142509
+
Val
TAC
[ENA]
¡û
>W1810785238
QRBK01000005
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
51419
51494
+
Val
TAC
[ENA]
¡û
>W2011194971
PIQA01000001
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
854005
854080
+
Val
TAC
[ENA]
¡û
>W2011195070
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
605365
605440
+
Val
TAC
[ENA]
¡û
>W2011195071
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
605477
605552
+
Val
TAC
[ENA]
¡û
>W2011634100
SMGD01000011
Gammaproteobacteria
Celerinatantimonas diazotrophica DSM 18577 [SMGD]
383558
383633
+
Val
TAC
[ENA]
¡û
>W2011634102
SMGD01000011
Gammaproteobacteria
Celerinatantimonas diazotrophica DSM 18577 [SMGD]
383718
383793
+
Val
TAC
[ENA]
¡û
>W2011648281
SNWT01000005
Gammaproteobacteria
Idiomarina sp. 017G [SNWT]
51419
51494
+
Val
TAC
[ENA]
¡û
>W2011649486
SNXN01000007
Gammaproteobacteria
Idiomarina loihiensis E2 [SNXN]
50191
50116
-
Val
TAC
[ENA]
¡û
>W2011652724
SNZY01000007
Gammaproteobacteria
Idiomarina sp. H2 [SNZY]
142434
142509
+
Val
TAC
[ENA]
¡û
>W2012353421
WJRO01000005
Gammaproteobacteria
Idiomarina loihiensis SN11 [WJRO]
46495
46420
-
Val
TAC
[ENA]
¡û
>W2110020803
BMDY01000013
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
72885
72810
-
Val
TAC
[ENA]
¡û
>W2110020805
BMDY01000013
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
72631
72556
-
Val
TAC
[ENA]
¡û
>W2110429013
JAEMOO010000012
Gammaproteobacteria
Idiomarina abyssalis KJE-1 [JAEMOO]
54297
54372
+
Val
TAC
[ENA]
¡û
>W2110429064
JAEMOP010000002
Gammaproteobacteria
Idiomarina abyssalis KJE-2 [JAEMOP]
1799249
1799174
-
Val
TAC
[ENA]
¡û
>W2110429214
JAEMOS010000024
Gammaproteobacteria
Idiomarina abyssalis KJE-3 [JAEMOS]
28369
28294
-
Val
TAC
[ENA]
¡û
>W2110577349
JAGWDM010000001
Gammaproteobacteria
Idiomarina abyssalis CG1230 [JAGWDM]
108634
108559
-
Val
TAC
[ENA]
¡û
>C211388137
CP081832
Gammaproteobacteria
Idiomarina abyssalis MSP-CT [CP081832]
1743526
1743601
+
Val
TAC
-
¡û
>C211426443
OU594967
Gammaproteobacteria
Celerinatantimonas diazotrophica [OU594967]
2832410
2832485
+
Val
TAC
-
¡û
>C211426445
OU594967
Gammaproteobacteria
Celerinatantimonas diazotrophica [OU594967]
2832570
2832645
+
Val
TAC
-
¡û
>C231135872
CP074073
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074073]
539473
539398
-
Val
TAC
-
¡û
>C161049660
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
4172002
4171927
-
Val
TAC
-
¡û
>C161049662
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
4171748
4171673
-
Val
TAC
-
¡û
>C131016270
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1906137
1906212
+
Val
TAC
[Ensembl]
¡û
>W1610616496
LGOW01000015
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
7777
7852
+
Val
TAC
[ENA]
¡û
>W1610621712
LHSG01000001
Gammaproteobacteria
Idiomarina zobellii [LHSG]
327853
327928
+
Val
TAC
[ENA]
¡û
>W1610800157
LOPZ01000204
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
97696
97621
-
Val
TAC
[ENA]
¡û
>W1610877990
LRFI01000204
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
97696
97621
-
Val
TAC
[ENA]
¡û
>W1610937038
LUNZ01000032
Gammaproteobacteria
Idiomarina sp. REDSEA-S21_B4 [LUNZ]
876
951
+
Val
TAC
[ENA]
¡û
>W1610937060
LUOA01000017
Gammaproteobacteria
Idiomarina sp. REDSEA-S27_B4 [LUOA]
36381
36306
-
Val
TAC
[ENA]
¡û
>W1710515720
FNCB01000001
Gammaproteobacteria
Idiomarina zobellii [FNCB]
326685
326760
+
Val
TAC
[ENA]
¡û
>W1710577926
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
992467
992542
+
Val
TAC
[ENA]
¡û
>W1710741631
LGOW01000015
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
7777
7852
+
Val
TAC
[ENA]
¡û
>W1710752585
LHSG01000001
Gammaproteobacteria
Idiomarina zobellii [LHSG]
327853
327928
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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