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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.515344 (32 seq.)
>W1712084145
NHQT01000026
Actinomycetota
Nocardioides sp. XL1 [NHQT]
2680
2755
+
Thr
TGT
[ENA]
¡û
>C015205
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
4231514
4231439
-
Thr
TGT
[Ensembl]
¡û
>WENV180000023
CZKA01000020
[CZKA] metagenome; liquid mineral medium
105084
105157
+
Thr
TGT
[ENA]
¡û
>WENV180304234
OBJH01144492
[OBJH] soil metagenome; soil
93
18
-
Thr
TGT
[ENA]
¡û
>WENV180692945
OCZS010874240
[OCZS] soil metagenome; soil
83
157
+
Thr
TGT
[ENA]
¡û
>W09103288
AAJB01000108
Actinomycetota
Nocardioides sp. JS614 [AAJB]
13403
13328
-
Thr
TGT
[ENA]
¡û
>W141775209
JOJN01000006
Actinomycetota
Nocardioides aequoreus [JOJN]
117156
117083
-
Thr
TGT
[ENA]
¡û
>W1810089849
PGEZ01000001
Actinomycetota
Mumia flava DSM 27763 [PGEZ]
1354762
1354688
-
Thr
TGT
[ENA]
¡û
>W1810861659
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
3452470
3452397
-
Thr
TGT
[ENA]
¡û
>W2010472434
JAAHFJ010000001
Actinomycetota
Mumia sp. ZJ1417 [JAAHFJ]
502872
502797
-
Thr
TGT
[ENA]
¡û
>W2010472473
JAAHFK010000001
Actinomycetota
Mumia sp. ZJ430 [JAAHFK]
813747
813822
+
Thr
TGT
[ENA]
¡û
>W2010668642
JACBZR010000001
Actinomycetota
Nocardioides panzhihuensis DSM 26487 [JACBZR]
4355283
4355209
-
Thr
TGT
[ENA]
¡û
>W2010669029
JACCAA010000001
Actinomycetota
Nocardioides daedukensis DSM 23819 [JACCAA]
2980679
2980754
+
Thr
TGT
[ENA]
¡û
>W2010674820
JACCFP010000001
Actinomycetota
Nocardioides thalensis DSM 103833 [JACCFP]
774736
774810
+
Thr
TGT
[ENA]
¡û
>W2010715521
JACHWR010000001
Actinomycetota
Nocardioides soli DSM 105498 [JACHWR]
1946666
1946593
-
Thr
TGT
[ENA]
¡û
>W2011982134
VDFQ02000001
Actinomycetota
Mumia sp. Z350 [VDFQ]
1284899
1284974
+
Thr
TGT
[ENA]
¡û
>W2012030004
VHIB01000001
Actinomycetota
Marmoricola sp. YIM 730233 [VHIB]
1225609
1225683
+
Thr
TGT
[ENA]
¡û
>W2012356810
WJYO01000001
Actinomycetota
Mumia xiangluensis NEAU-KD1 T [WJYO]
1284899
1284974
+
Thr
TGT
[ENA]
¡û
>W2110038247
BMRK01000008
Actinomycetota
Nocardioides luteus JCM 3358 [BMRK]
145637
145562
-
Thr
TGT
[ENA]
¡û
>W2110293168
JACYXZ010000001
Actinomycetota
Nocardioides sp. MJB4 [JACYXZ]
410437
410511
+
Thr
TGT
[ENA]
¡û
>W2110441162
JAERJA010000013
Actinomycetota
Nocardioides sp. DJM-14 [JAERJA]
19777
19850
+
Thr
TGT
[ENA]
¡û
>W2110656877
JAHWCI010000008
Actinomycetota
Mumia sp. zg.B17 [JAHWCI]
250157
250084
-
Thr
TGT
[ENA]
¡û
>W2110656903
JAHWCJ010000002
Actinomycetota
Mumia sp. zg.B21 [JAHWCJ]
798165
798238
+
Thr
TGT
[ENA]
¡û
>W2110656939
JAHWCK010000001
Actinomycetota
Mumia sp. zg.B53 [JAHWCK]
2009381
2009454
+
Thr
TGT
[ENA]
¡û
>C211342146
CP076053
Actinomycetota
Nocardioidaceae bacterium TYQ2 [CP076053]
2046716
2046790
+
Thr
TGT
-
¡û
>C211342534
CP076104
Actinomycetota
Nocardioides sp. LMS-CY [CP076104]
4707540
4707467
-
Thr
TGT
-
¡û
>C231364396
CP095846
Actinomycetota
Nocardioidaceae bacterium SCSIO 66511 [CP095846]
4061904
4061829
-
Thr
TGT
-
¡û
>C241138174
CP049867
Actinomycetota
Nocardioides sp. HDW12B [CP049867]
305718
305643
-
Thr
TGT
-
¡û
>C241179979
CP059901
Actinomycetota
Mumia sp. ZJ1417 [CP059901]
624321
624396
+
Thr
TGT
-
¡û
>C241317214
CP134227
Actinomycetota
Nocardioides marmorisolisilvae YR1 [CP134227]
3440613
3440686
+
Thr
TGT
-
¡û
>W2310021986
BSEL01000005
Actinomycetota
Nocardioides luteus VKM Ac-1246 [BSEL]
532764
532689
-
Thr
TGT
[ENA]
¡û
>W1511398054
JTDJ01000024
Actinomycetota
Mumia flava MUSC 201 [JTDJ]
100941
101016
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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