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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.515598 (50 seq.)
>W1710860755
LMDC01000029
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
17841
17766
-
Thr
TGT
[ENA]
¡û
>W1710861113
LMDK01000002
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
52240
52165
-
Thr
TGT
[ENA]
¡û
>W1710861692
LMDU01000015
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
59639
59564
-
Thr
TGT
[ENA]
¡û
>W1710864086
LMFP01000008
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
224006
224081
+
Thr
TGT
[ENA]
¡û
>W1710866086
LMHE01000015
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
59639
59564
-
Thr
TGT
[ENA]
¡û
>W1711259902
LYVQ01000029
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
12055
12130
+
Thr
TGT
[ENA]
¡û
>W1712102883
NIOE01000001
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
110105
110180
+
Thr
TGT
[ENA]
¡û
>W1712102946
NIOF01000001
Betaproteobacteria
Roseateles aquatilis [NIOF]
990886
990811
-
Thr
TGT
[ENA]
¡û
>W1712103033
NIOG01000010
Betaproteobacteria
Roseateles terrae [NIOG]
113259
113184
-
Thr
TGT
[ENA]
¡û
>W1712105742
NISI01000016
Betaproteobacteria
Roseateles puraquae [NISI]
71651
71576
-
Thr
TGT
[ENA]
¡û
>WENV180016812
FSVW01003000
[FSVW] metagenome; soil
464
539
+
Thr
TGT
[ENA]
¡û
>WENV180016827
FSVW01003733
[FSVW] metagenome; soil
4519
4444
-
Thr
TGT
[ENA]
¡û
>WENV180025849
FTIQ01287959
[FTIQ] metagenome; soil
84
159
+
Thr
TGT
[ENA]
¡û
>WENV180027915
FTIZ01255356
[FTIZ] metagenome; soil
41
116
+
Thr
TGT
[ENA]
¡û
>WENV180028825
FTJH01030510
[FTJH] metagenome; soil
842
767
-
Thr
TGT
[ENA]
¡û
>WENV180028833
FTJH01080627
[FTJH] metagenome; soil
431
506
+
Thr
TGT
[ENA]
¡û
>WENV183696796
OUME01000004
[OUME] metagenome; soil
56263
56188
-
Thr
TGT
[ENA]
¡û
>WENV170011000
APMI01038621
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1727
1652
-
Thr
TGT
[ENA]
¡û
>W1911647474
QAJN01000002
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
62201
62126
-
Thr
TGT
[ENA]
¡û
>W1911766100
QXDH01000004
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
556180
556255
+
Thr
TGT
[ENA]
¡û
>W1810081352
PEOG01000025
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
67939
68014
+
Thr
TGT
[ENA]
¡û
>W1810222814
POSP01000001
Betaproteobacteria
Paucibacter aquatile CR182 [POSP]
431174
431249
+
Thr
TGT
[ENA]
¡û
>W1810884646
QUMT01000005
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
168135
168060
-
Thr
TGT
[ENA]
¡û
>W2010708609
JACHLP010000001
Betaproteobacteria
Paucibacter oligotrophus S00239 [JACHLP]
946440
946365
-
Thr
TGT
[ENA]
¡û
>W2010716782
JACHXO010000010
Betaproteobacteria
Roseateles terrae CECT 7247 [JACHXO]
113249
113174
-
Thr
TGT
[ENA]
¡û
>W2010718391
JACHYS010000004
Betaproteobacteria
Mitsuaria sp. BK037 [JACHYS]
706340
706415
+
Thr
TGT
[ENA]
¡û
>W2010718398
JACHYT010000001
Betaproteobacteria
Mitsuaria sp. BK041 [JACHYT]
762051
762126
+
Thr
TGT
[ENA]
¡û
>W2010718456
JACHYU010000001
Betaproteobacteria
Mitsuaria sp. BK045 [JACHYU]
761951
762026
+
Thr
TGT
[ENA]
¡û
>W2010742989
JACJUG010000004
Betaproteobacteria
Mitsuaria sp. WAJ17 [JACJUG]
213345
213270
-
Thr
TGT
[ENA]
¡û
>W2011235458
QAJN01000002
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
62201
62126
-
Thr
TGT
[ENA]
¡û
>W2011324543
QXDH01000004
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
556180
556255
+
Thr
TGT
[ENA]
¡û
>W2011540192
SCOI01000002
Betaproteobacteria
Burkholderiales bacterium C2 [SCOI]
168128
168053
-
Thr
TGT
[ENA]
¡û
>W2011629789
SMBU01000048
Betaproteobacteria
Pelomonas saccharophila DSM 654 [SMBU]
26097
26172
+
Thr
TGT
[ENA]
¡û
>W2011649692
SNXS01000005
Betaproteobacteria
Paucibacter toxinivorans DSM 16998 [SNXS]
435501
435426
-
Thr
TGT
[ENA]
¡û
>W2012108186
VOSR01000584
Betaproteobacteria
Mitsuaria sp. TWR114 [VOSR]
6783
6858
+
Thr
TGT
[ENA]
¡û
>W2110566599
JAGQDG010000004
Betaproteobacteria
Ideonella paludis KCTC 32238 [JAGQDG]
575525
575450
-
Thr
TGT
[ENA]
¡û
>W2110692168
JAIQCM010000003
Betaproteobacteria
Paucibacter aquatile DH15 [JAIQCM]
22360
22435
+
Thr
TGT
[ENA]
¡û
>C211081554
CP049919
Betaproteobacteria
Kinneretia sp. DAIF2 [CP049919]
4656563
4656488
-
Thr
TGT
-
¡û
>C231494077
CP104562
Betaproteobacteria
Roseateles sp. BIM B-1768 [CP104562]
1728020
1728095
+
Thr
TGT
-
¡û
>C241253403
CP124551
Betaproteobacteria
Paucibacter aquatile DH15 [CP124551]
1307264
1307339
+
Thr
TGT
-
¡û
>C11118963
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
874693
874768
+
Thr
TGT
[Ensembl]
¡û
>C161036456
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
3648431
3648356
-
Thr
TGT
-
¡û
>C161060269
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
1500866
1500941
+
Thr
TGT
[Ensembl]
¡û
>W1610723101
LMDC01000029
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
17841
17766
-
Thr
TGT
[ENA]
¡û
>W1610723459
LMDK01000002
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
52240
52165
-
Thr
TGT
[ENA]
¡û
>W1610724038
LMDU01000015
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
59639
59564
-
Thr
TGT
[ENA]
¡û
>W1610726432
LMFP01000008
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
224006
224081
+
Thr
TGT
[ENA]
¡û
>W1610728432
LMHE01000015
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
59639
59564
-
Thr
TGT
[ENA]
¡û
>W1710544460
FOAV01000004
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
195644
195719
+
Thr
TGT
[ENA]
¡û
>W1710575419
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
709585
709660
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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