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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.515628 (149 seq.)
>WENV180122465
OASU01000211
[OASU] human gut metagenome; faeces
22563
22488
-
Lys
TTT
[ENA]
¡û
>WENV180123433
OASW01002072
[OASW] human gut metagenome; faeces
422
497
+
Lys
TTT
[ENA]
¡û
>WENV180124561
OASX01027789
[OASX] human gut metagenome; faeces
272
347
+
Lys
TTT
[ENA]
¡û
>WENV180129065
OATB01022991
[OATB] human gut metagenome; faeces
250
325
+
Lys
TTT
[ENA]
¡û
>WENV180129256
OATC01000178
[OATC] human gut metagenome; faeces
22569
22494
-
Lys
TTT
[ENA]
¡û
>WENV180137187
OATO01000926
[OATO] human gut metagenome; faeces
1848
1773
-
Lys
TTT
[ENA]
¡û
>WENV180139934
OATT01002033
[OATT] human gut metagenome; faeces
7297
7222
-
Lys
TTT
[ENA]
¡û
>WENV180146514
OAUF01000566
[OAUF] human gut metagenome; faeces
23339
23414
+
Lys
TTT
[ENA]
¡û
>WENV180149240
OAUK01036481
[OAUK] human gut metagenome; faeces
231
306
+
Lys
TTT
[ENA]
¡û
>WENV180149521
OAUL01003123
[OAUL] human gut metagenome; faeces
428
503
+
Lys
TTT
[ENA]
¡û
>WENV180155366
OAUU01036489
[OAUU] human gut metagenome; faeces
283
358
+
Lys
TTT
[ENA]
¡û
>WENV180160675
OAVC01012564
[OAVC] human gut metagenome; faeces
392
467
+
Lys
TTT
[ENA]
¡û
>WENV180162585
OAVG01035474
[OAVG] human gut metagenome; faeces
80
5
-
Lys
TTT
[ENA]
¡û
>WENV180175265
OAWB01035556
[OAWB] human gut metagenome; faeces
34
109
+
Lys
TTT
[ENA]
¡û
>WENV180179640
OAWJ01003899
[OAWJ] human gut metagenome; faeces
4886
4961
+
Lys
TTT
[ENA]
¡û
>WENV180189606
OAWY01000579
[OAWY] human gut metagenome; faeces
23336
23411
+
Lys
TTT
[ENA]
¡û
>WENV180190403
OAWZ01003880
[OAWZ] human gut metagenome; faeces
319
394
+
Lys
TTT
[ENA]
¡û
>WENV180191717
OAXJ01000419
[OAXJ] human gut metagenome; faeces
23336
23411
+
Lys
TTT
[ENA]
¡û
>WENV180193677
OAZW01002232
[OAZW] human gut metagenome; faeces
3156
3081
-
Lys
TTT
[ENA]
¡û
>WENV180237536
OBCY01006506
[OBCY] human gut metagenome; human gut
1332
1407
+
Lys
TTT
[ENA]
¡û
>WENV180281297
OBIA01006460
[OBIA] human gut metagenome; human gut
2678
2753
+
Lys
TTT
[ENA]
¡û
>WENV180305821
OBJO01004924
[OBJO] human gut metagenome; human gut
857
932
+
Lys
TTT
[ENA]
¡û
>WENV180306921
OBJP01027965
[OBJP] human gut metagenome; human gut
348
423
+
Lys
TTT
[ENA]
¡û
>WENV180312175
OBJX01000010
[OBJX] human gut metagenome; fecal sample
275417
275492
+
Lys
TTT
[ENA]
¡û
>WENV180407174
OBUQ01000568
[OBUQ] human gut metagenome; faeces
5914
5839
-
Lys
TTT
[ENA]
¡û
>WENV180408862
OBUT01000166
[OBUT] human gut metagenome; faeces
25527
25452
-
Lys
TTT
[ENA]
¡û
>WENV180409682
OBUV01000103
[OBUV] human gut metagenome; faeces
23336
23411
+
Lys
TTT
[ENA]
¡û
>WENV180411984
OBUZ01009211
[OBUZ] human gut metagenome; faeces
371
446
+
Lys
TTT
[ENA]
¡û
>WENV180413609
OBVB01021200
[OBVB] human gut metagenome; faeces
219
144
-
Lys
TTT
[ENA]
¡û
>WENV180414291
OBVC01014415
[OBVC] human gut metagenome; faeces
331
256
-
Lys
TTT
[ENA]
¡û
>WENV180418105
OBVJ01000268
[OBVJ] human gut metagenome; faeces
7670
7595
-
Lys
TTT
[ENA]
¡û
>WENV180419677
OBVN01000254
[OBVN] human gut metagenome; faeces
23214
23289
+
Lys
TTT
[ENA]
¡û
>WENV180420012
OBVO01000261
[OBVO] human gut metagenome; faeces
18839
18914
+
Lys
TTT
[ENA]
¡û
>WENV180423692
OBVW01004106
[OBVW] human gut metagenome; faeces
1304
1229
-
Lys
TTT
[ENA]
¡û
>WENV180432667
OBWI01028662
[OBWI] human gut metagenome; faeces
264
189
-
Lys
TTT
[ENA]
¡û
>WENV180434130
OBWK01015850
[OBWK] human gut metagenome; faeces
332
407
+
Lys
TTT
[ENA]
¡û
>WENV180448299
OBXE01007453
[OBXE] human gut metagenome; faeces
567
642
+
Lys
TTT
[ENA]
¡û
>WENV180454427
OBXM01048767
[OBXM] human gut metagenome; faeces
82
7
-
Lys
TTT
[ENA]
¡û
>WENV180455717
OBXO01027580
[OBXO] human gut metagenome; faeces
82
7
-
Lys
TTT
[ENA]
¡û
>WENV180458382
OBXV01023881
[OBXV] human gut metagenome; faeces
189
114
-
Lys
TTT
[ENA]
¡û
>WENV180461045
OBXZ01005367
[OBXZ] human gut metagenome; faeces
2582
2507
-
Lys
TTT
[ENA]
¡û
>WENV180467074
OBYG01069580
[OBYG] human gut metagenome; faeces
64
139
+
Lys
TTT
[ENA]
¡û
>WENV180476272
OBYX01000006
[OBYX] human gut metagenome; faeces
16538
16463
-
Lys
TTT
[ENA]
¡û
>WENV180476652
OBYY01003215
[OBYY] human gut metagenome; faeces
833
908
+
Lys
TTT
[ENA]
¡û
>WENV180480531
OBZD01004924
[OBZD] human gut metagenome; faeces
2108
2033
-
Lys
TTT
[ENA]
¡û
>WENV180484431
OBZI01000199
[OBZI] human gut metagenome; faeces
22569
22494
-
Lys
TTT
[ENA]
¡û
>WENV180485815
OBZK01000640
[OBZK] human gut metagenome; faeces
20959
21034
+
Lys
TTT
[ENA]
¡û
>WENV180487410
OBZO01002215
[OBZO] human gut metagenome; faeces
231
306
+
Lys
TTT
[ENA]
¡û
>WENV180490118
OBZT01006968
[OBZT] human gut metagenome; faeces
571
646
+
Lys
TTT
[ENA]
¡û
>WENV180496935
OCAE01000036
[OCAE] human gut metagenome; faeces
129280
129205
-
Lys
TTT
[ENA]
¡û
>WENV180503122
OCAM01002088
[OCAM] human gut metagenome; faeces
6971
6896
-
Lys
TTT
[ENA]
¡û
>WENV180504193
OCAN01000779
[OCAN] human gut metagenome; faeces
22599
22524
-
Lys
TTT
[ENA]
¡û
>WENV180506531
OCAS01001114
[OCAS] human gut metagenome; faeces
6119
6044
-
Lys
TTT
[ENA]
¡û
>WENV180509252
OCAV01005744
[OCAV] human gut metagenome; faeces
3519
3444
-
Lys
TTT
[ENA]
¡û
>WENV180600061
OCPP01022548
[OCPP] human gut metagenome; faeces
285
210
-
Lys
TTT
[ENA]
¡û
>WENV181187321
OENY01001677
[OENY] human gut metagenome; human gut
188
113
-
Lys
TTT
[ENA]
¡û
>WENV181340139
OFMG01019810
[OFMG] human gut metagenome; human gut
725
650
-
Lys
TTT
[ENA]
¡û
>WENV181443573
OGDP01031961
[OGDP] metagenome; Human gut stool
589
514
-
Lys
TTT
[ENA]
¡û
>WENV181446506
OGDT01015135
[OGDT] metagenome; Human gut stool
113
38
-
Lys
TTT
[ENA]
¡û
>WENV181463675
OGEO01017404
[OGEO] metagenome; Human gut stool
309
384
+
Lys
TTT
[ENA]
¡û
>W08003090
ABFX02000004
Bacillota
Thomasclavelia ramosa DSM 1402 [ABFX]
139
214
+
Lys
TTT
[ENA]
¡û
>W08003124
ABFX02000008
Bacillota
Thomasclavelia ramosa DSM 1402 [ABFX]
252514
252442
-
Lys
TTT
[ENA]
¡û
>WENV181551094
OGIN01000711
[OGIN] metagenome; Human gut stool
21271
21346
+
Lys
TTT
[ENA]
¡û
>WENV181580233
OGJZ01014826
[OGJZ] metagenome; Human gut stool
1724
1799
+
Lys
TTT
[ENA]
¡û
>WENV181600202
OGLD01001203
[OGLD] metagenome; Human gut stool
5686
5761
+
Lys
TTT
[ENA]
¡û
>WENV181709009
OGPM01023064
[OGPM] human gut metagenome; faeces
166
91
-
Lys
TTT
[ENA]
¡û
>WENV181794520
OGRS01000811
[OGRS] human gut metagenome; faeces
23336
23411
+
Lys
TTT
[ENA]
¡û
>WENV181919455
OGYI01000874
[OGYI] human gut metagenome; faeces
10805
10730
-
Lys
TTT
[ENA]
¡û
>WENV181934630
OGYT01027148
[OGYT] human gut metagenome; faeces
458
383
-
Lys
TTT
[ENA]
¡û
>WENV181938788
OGYW01048579
[OGYW] human gut metagenome; faeces
302
377
+
Lys
TTT
[ENA]
¡û
>WENV181987156
OHAM01023066
[OHAM] human gut metagenome; faeces
1243
1318
+
Lys
TTT
[ENA]
¡û
>WENV182022054
OHCC01005093
[OHCC] human gut metagenome; feces
122
47
-
Lys
TTT
[ENA]
¡û
>WENV182049687
OHEC01009649
[OHEC] human gut metagenome; feces
1936
1861
-
Lys
TTT
[ENA]
¡û
>WENV182086454
OHGT01012951
[OHGT] human gut metagenome; feces
750
675
-
Lys
TTT
[ENA]
¡û
>WENV182098921
OHHQ01026595
[OHHQ] human gut metagenome; feces
626
701
+
Lys
TTT
[ENA]
¡û
>WENV182102667
OHHV01009402
[OHHV] human gut metagenome; feces
355
280
-
Lys
TTT
[ENA]
¡û
>WENV182107401
OHIK01004792
[OHIK] human gut metagenome; feces
2555
2480
-
Lys
TTT
[ENA]
¡û
>WENV182117983
OHJF01000453
[OHJF] human gut metagenome; feces
23312
23384
+
Lys
TTT
[ENA]
¡û
>WENV182127932
OHJX01005745
[OHJX] human gut metagenome; feces
441
516
+
Lys
TTT
[ENA]
¡û
>WENV182441257
OIKC01004718
[OIKC] human gut metagenome; human gut
770
845
+
Lys
TTT
[ENA]
¡û
>WENV182442080
OIKE01026976
[OIKE] human gut metagenome; human gut
167
92
-
Lys
TTT
[ENA]
¡û
>WENV182458608
OINI01023988
[OINI] human gut metagenome; human gut
634
559
-
Lys
TTT
[ENA]
¡û
>WENV182461339
OINS01003323
[OINS] human gut metagenome; human gut
970
895
-
Lys
TTT
[ENA]
¡û
>WENV182487924
OIRX01016860
[OIRX] human gut metagenome; human gut
259
334
+
Lys
TTT
[ENA]
¡û
>WENV182505831
OIUY01009489
[OIUY] human gut metagenome; human gut
316
391
+
Lys
TTT
[ENA]
¡û
>WENV182597218
OJJA01007611
[OJJA] metagenome; faeces
786
711
-
Lys
TTT
[ENA]
¡û
>WENV182601823
OJJJ01000791
[OJJJ] metagenome; faeces
46
121
+
Lys
TTT
[ENA]
¡û
>WENV182601857
OJJJ01001001
[OJJJ] metagenome; faeces
8643
8568
-
Lys
TTT
[ENA]
¡û
>WENV182601870
OJJJ01001079
[OJJJ] metagenome; faeces
7867
7792
-
Lys
TTT
[ENA]
¡û
>WENV182606529
OJJT01020346
[OJJT] metagenome; faeces
170
245
+
Lys
TTT
[ENA]
¡û
>WENV182612095
OJJX01035768
[OJJX] metagenome; faeces
330
405
+
Lys
TTT
[ENA]
¡û
>WENV182613745
OJKA01009506
[OJKA] metagenome; faeces
1307
1382
+
Lys
TTT
[ENA]
¡û
>WENV182618265
OJKE01022493
[OJKE] metagenome; faeces
232
307
+
Lys
TTT
[ENA]
¡û
>WENV182670258
OJNK01028817
[OJNK] human gut metagenome; human gut
437
362
-
Lys
TTT
[ENA]
¡û
>WENV182699375
OJON01021297
[OJON] human gut metagenome; human gut
163
88
-
Lys
TTT
[ENA]
¡û
>WENV182807139
OJVV01000395
[OJVV] human gut metagenome; human gut
1071
996
-
Lys
TTT
[ENA]
¡û
>WENV182813154
OJXZ01000753
[OJXZ] human gut metagenome; human gut
3350
3275
-
Lys
TTT
[ENA]
¡û
>WENV182830322
OKDX01007026
[OKDX] human gut metagenome; human gut
742
817
+
Lys
TTT
[ENA]
¡û
>WENV182838164
OKGO01000905
[OKGO] human gut metagenome; human gut
3382
3307
-
Lys
TTT
[ENA]
¡û
>WENV182843197
OKIK01003800
[OKIK] human gut metagenome; human gut
1119
1044
-
Lys
TTT
[ENA]
¡û
>WENV182863518
OKPT01000787
[OKPT] human gut metagenome; human gut
523
598
+
Lys
TTT
[ENA]
¡û
>WENV182883292
OKSB01006472
[OKSB] human gut metagenome; faeces
4296
4221
-
Lys
TTT
[ENA]
¡û
>WENV182891690
OKSH01002868
[OKSH] human gut metagenome; faeces
9838
9913
+
Lys
TTT
[ENA]
¡û
>WENV182990152
OLAL01011258
[OLAL] human gut metagenome; human gut
112
187
+
Lys
TTT
[ENA]
¡û
>WENV182991764
OLAR01004063
[OLAR] human gut metagenome; human gut
1387
1462
+
Lys
TTT
[ENA]
¡û
>WENV182997376
OLBP01004326
[OLBP] human gut metagenome; human gut
1641
1716
+
Lys
TTT
[ENA]
¡û
>WENV183003768
OLCT01009454
[OLCT] human gut metagenome; human gut
655
580
-
Lys
TTT
[ENA]
¡û
>WENV183007836
OLDJ01009439
[OLDJ] human gut metagenome; human gut
483
408
-
Lys
TTT
[ENA]
¡û
>WENV183018368
OLEY01009606
[OLEY] human gut metagenome; human gut
141
66
-
Lys
TTT
[ENA]
¡û
>WENV183063276
OLIF01013436
[OLIF] metagenome; faeces
188
263
+
Lys
TTT
[ENA]
¡û
>WENV183090417
OLJZ01003481
[OLJZ] human gut metagenome; human gut
572
497
-
Lys
TTT
[ENA]
¡û
>WENV183135781
OLOE01012366
[OLOE] human gut metagenome; faeces
838
763
-
Lys
TTT
[ENA]
¡û
>WENV183201786
OLPX01000007
[OLPX] human gut metagenome; faeces
264979
265054
+
Lys
TTT
[ENA]
¡û
>WENV183221603
OLQL01012618
[OLQL] human gut metagenome; faeces
1556
1631
+
Lys
TTT
[ENA]
¡û
>WENV183244219
OLRD01012550
[OLRD] human gut metagenome; faeces
714
639
-
Lys
TTT
[ENA]
¡û
>WENV183297936
OLSM01017806
[OLSM] human gut metagenome; faeces
940
1015
+
Lys
TTT
[ENA]
¡û
>WENV183463430
OMDY01000417
[OMDY] human gut metagenome; feces
19517
19592
+
Lys
TTT
[ENA]
¡û
>WENV183500428
OMGQ01012745
[OMGQ] human gut metagenome; human gut
501
426
-
Lys
TTT
[ENA]
¡û
>WENV183588050
OOCU01026451
[OOCU] human gut metagenome; human gut
214
289
+
Lys
TTT
[ENA]
¡û
>WENV183595457
OODC01028401
[OODC] human gut metagenome; human gut
521
596
+
Lys
TTT
[ENA]
¡û
>WENV183761971
PPYE01267382
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
962
887
-
Lys
TTT
[ENA]
¡û
>W1810116179
PHNQ01000018
Bacillota
Thomasclavelia cocleata ATCC 29902 [PHNQ]
30604
30529
-
Lys
TTT
[ENA]
¡û
>W1810889350
QUSJ01000038
Bacillota
Thomasclavelia ramosa AM21-17 [QUSJ]
76
1
-
Lys
TTT
[ENA]
¡û
>W2010149062
CAACVM010000015
Bacillota
Erysipelatoclostridium ramosum [CAACVM]
89034
88959
-
Lys
TTT
[ENA]
¡û
>W2010149072
CAACVM010000033
Bacillota
Erysipelatoclostridium ramosum [CAACVM]
22222
22147
-
Lys
TTT
[ENA]
¡û
>W2010267747
CABKQU020000001
Bacillota
Erysipelotrichaceae bacterium [CABKQU]
1651149
1651224
+
Lys
TTT
[ENA]
¡û
>W2012040454
VIQR01000022
Bacillota
[Clostridium] cocleatum I50 [VIQR]
30812
30737
-
Lys
TTT
[ENA]
¡û
>W2110075828
CACRTL010000008
Bacillota
Erysipelatoclostridium ramosum [CACRTL]
239622
239547
-
Lys
TTT
[ENA]
¡û
>W2110075844
CACRTL010000019
Bacillota
Erysipelatoclostridium ramosum [CACRTL]
22671
22596
-
Lys
TTT
[ENA]
¡û
>W2110627593
JAHOBA010000062
Bacillota
Erysipelatoclostridium ramosum MSK.23.86 [JAHOBA]
13399
13324
-
Lys
TTT
[ENA]
¡û
>W2110627720
JAHOBE010000008
Bacillota
Erysipelatoclostridium ramosum MSK.23.76 [JAHOBE]
88959
88884
-
Lys
TTT
[ENA]
¡û
>W2110627842
JAHOBG010000168
Bacillota
Erysipelatoclostridium ramosum MSK.23.70 [JAHOBG]
82
7
-
Lys
TTT
[ENA]
¡û
>W2110627892
JAHOBH010000168
Bacillota
Erysipelatoclostridium ramosum MSK.23.69 [JAHOBH]
82
7
-
Lys
TTT
[ENA]
¡û
>W2110634446
JAHOMB010000043
Bacillota
Erysipelatoclostridium ramosum MSK.14.26 [JAHOMB]
23339
23414
+
Lys
TTT
[ENA]
¡û
>W2110638559
JAHQUW010000045
Bacillota
Erysipelatoclostridium ramosum MSK.15.28 [JAHQUW]
10421
10496
+
Lys
TTT
[ENA]
¡û
>C211047710
CP036346
Bacillota
Erysipelatoclostridium ramosum DSM 1402 [CP036346]
2545819
2545744
-
Lys
TTT
-
¡û
>C211047743
CP036346
Bacillota
Erysipelatoclostridium ramosum DSM 1402 [CP036346]
1381212
1381137
-
Lys
TTT
-
¡û
>C211212083
CP065674
Bacillota
Erysipelatoclostridium ramosum FDAARGOS_906 [CP065674]
1252571
1252646
+
Lys
TTT
-
¡û
>C211212116
CP065674
Bacillota
Erysipelatoclostridium ramosum FDAARGOS_906 [CP065674]
2417217
2417292
+
Lys
TTT
-
¡û
>C211244108
CP068170
Bacillota
Erysipelatoclostridium ramosum FDAARGOS_1105 [CP068170]
17964
18039
+
Lys
TTT
-
¡û
>C211244141
CP068170
Bacillota
Erysipelatoclostridium ramosum FDAARGOS_1105 [CP068170]
1336328
1336403
+
Lys
TTT
-
¡û
>C211403902
CP083622
Bacillota
Erysipelatoclostridium ramosum FDAARGOS_1519 [CP083622]
2975576
2975501
-
Lys
TTT
-
¡û
>C211403935
CP083622
Bacillota
Erysipelatoclostridium ramosum FDAARGOS_1519 [CP083622]
1642931
1642856
-
Lys
TTT
-
¡û
>W2130021055
JADMSW010000002
Bacillota
Erysipelatoclostridium ramosum BSD2780061689_150309_C12 [JADMSW]
22591
22516
-
Lys
TTT
[ENA]
¡û
>W2130021068
JADMSW010000007
Bacillota
Erysipelatoclostridium ramosum BSD2780061689_150309_C12 [JADMSW]
162886
162811
-
Lys
TTT
[ENA]
¡û
>W121000162
ACTG01000003
Bacillota
Coprobacillus sp. 8_2_54BFAA [ACTG]
14
89
+
Lys
TTT
[ENA]
¡û
>W121000878
ACWL01000033
Bacillota
Coprobacillus sp. 3_3_56FAA [ACWL]
370
445
+
Lys
TTT
[ENA]
¡û
>W121000904
ACWL01000060
Bacillota
Coprobacillus sp. 3_3_56FAA [ACWL]
17429
17354
-
Lys
TTT
[ENA]
¡û
>W1710554556
FOIN01000008
Bacillota
Thomasclavelia cocleata [FOIN]
61509
61584
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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