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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.515683 (60 seq.)
>W1710786961
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3280749
3280674
-
Arg
CCT
[ENA]
¡û
>W1711183414
LWLA01000014
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
101218
101291
+
Arg
CCT
[ENA]
¡û
>WENV180018868
FTAW01000035
[FTAW] metagenome; soil
8
81
+
Arg
CCT
[ENA]
¡û
>WENV180023339
FTHV01000558
[FTHV] metagenome; soil
1224
1151
-
Arg
CCT
[ENA]
¡û
>WENV180023468
FTHY01000544
[FTHY] metagenome; soil
1224
1151
-
Arg
CCT
[ENA]
¡û
>WENV180028645
FTJE01372912
[FTJE] metagenome; soil
1389
1462
+
Arg
CCT
[ENA]
¡û
>WENV180033139
FTKF01000037
[FTKF] metagenome; soil
1755
1828
+
Arg
CCT
[ENA]
¡û
>WENV180033149
FTKF01001421
[FTKF] metagenome; soil
6131
6058
-
Arg
CCT
[ENA]
¡û
>WENV180033174
FTKF01009600
[FTKF] metagenome; soil
117
191
+
Arg
CCT
[ENA]
¡û
>WENV180033598
FTKL01000369
[FTKL] metagenome; soil
6973
6900
-
Arg
CCT
[ENA]
¡û
>W141282699
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
89497
89424
-
Arg
CCT
[ENA]
¡û
>W141282746
JAIZ01000016
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
2588
2661
+
Arg
CCT
[ENA]
¡û
>WENV170565590
FJVZ01000733
[FJVZ] metagenome; soil
6525
6452
-
Arg
CCT
[ENA]
¡û
>W141756141
JNWZ01000020
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
93464
93539
+
Arg
CCT
[ENA]
¡û
>W141757013
JNXO01001382
Actinomycetota
Kitasatospora misakiensis [JNXO]
880
953
+
Arg
CCT
[ENA]
¡û
>W141757819
JNYE01000014
Actinomycetota
Kitasatospora phosalacinea [JNYE]
63787
63860
+
Arg
CCT
[ENA]
¡û
>W141760903
JOAI01000093
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
1815
1888
+
Arg
CCT
[ENA]
¡û
>W141761919
JOBB01000528
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
744
671
-
Arg
CCT
[ENA]
¡û
>W141765019
JODB01007596
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
911
984
+
Arg
CCT
[ENA]
¡û
>W141766007
JODS01000007
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
47866
47793
-
Arg
CCT
[ENA]
¡û
>W141770061
JOGF01003749
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
239
166
-
Arg
CCT
[ENA]
¡û
>W141771937
JOHN01000003
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
135391
135464
+
Arg
CCT
[ENA]
¡û
>W141772021
JOHO01000008
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
168988
169063
+
Arg
CCT
[ENA]
¡û
>W141774388
JOJA01000055
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
409
482
+
Arg
CCT
[ENA]
¡û
>W141819802
JQML01000001
Actinomycetota
Streptacidiphilus albus JL83 [JQML]
3978583
3978510
-
Arg
CCT
[ENA]
¡û
>W141821643
JQNR01000005
Actinomycetota
Actinacidiphila yeochonensis CN732 [JQNR]
205036
205109
+
Arg
CCT
[ENA]
¡û
>W1911243769
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3297276
3297203
-
Arg
CCT
[ENA]
¡û
>W1810120768
PHTW01000001
Actinomycetota
Streptomyces sp. 4121.5 [PHTW]
3332102
3332029
-
Arg
CCT
[ENA]
¡û
>W1810694022
QLLT01000020
Actinomycetota
Kitasatospora sp. SolWspMP-SS2h [QLLT]
134054
133981
-
Arg
CCT
[ENA]
¡û
>W1810907954
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
6273204
6273277
+
Arg
CCT
[ENA]
¡û
>W2011069128
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3297276
3297203
-
Arg
CCT
[ENA]
¡û
>W2011491073
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
1345600
1345527
-
Arg
CCT
[ENA]
¡û
>W2011696852
SUMC01000068
Actinomycetota
Streptomyces sp. NEAU-C40 [SUMC]
33891
33964
+
Arg
CCT
[ENA]
¡û
>W2012047337
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
4505080
4505153
+
Arg
CCT
[ENA]
¡û
>W2012230643
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
3436962
3437035
+
Arg
CCT
[ENA]
¡û
>W2110039443
BMSD01000014
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
24978
24905
-
Arg
CCT
[ENA]
¡û
>W2110053245
BNBO01000008
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
22220
22147
-
Arg
CCT
[ENA]
¡û
>W2110053854
BNBY01000038
Actinomycetota
Kitasatospora xanthocidica JCM 4862 [BNBY]
29739
29812
+
Arg
CCT
[ENA]
¡û
>W2110556220
JAGIYX010000010
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
189612
189685
+
Arg
CCT
[ENA]
¡û
>W2110645383
JAHTKP010000013
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
106741
106814
+
Arg
CCT
[ENA]
¡û
>C201213296
CP048289
Actinomycetota
Streptacidiphilus sp. P02-A3a [CP048289]
948662
948735
+
Arg
CCT
-
¡û
>C201215026
CP048405
Actinomycetota
Streptacidiphilus sp. PB12-B1b [CP048405]
848156
848229
+
Arg
CCT
-
¡û
>W1510013983
BBPL01000062
Actinomycetota
Streptacidiphilus albus NBRC 100918 [BBPL]
18937
19010
+
Arg
CCT
[ENA]
¡û
>W2110751261
MSJQ01000370
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
32529
32602
+
Arg
CCT
[ENA]
¡û
>C231668898
OX419519
Actinomycetota
Kitasatospora sp. DSM 114396 [OX419519]
4533392
4533465
+
Arg
CCT
-
¡û
>C241202538
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
5233981
5234054
+
Arg
CCT
-
¡û
>C241209745
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
5311552
5311479
-
Arg
CCT
-
¡û
>C241210176
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
4360717
4360790
+
Arg
CCT
-
¡û
>C241210261
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
5045117
5045190
+
Arg
CCT
-
¡û
>C241211685
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
5649914
5649987
+
Arg
CCT
-
¡û
>C241211755
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
5706763
5706836
+
Arg
CCT
-
¡û
>C241321829
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
5337407
5337480
+
Arg
CCT
-
¡û
>W2310028112
BSRX01000018
Actinomycetota
Kitasatospora phosalacinea NBRC 14362 [BSRX]
63999
64072
+
Arg
CCT
[ENA]
¡û
>W1511529111
JYJF01000215
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
3487
3560
+
Arg
CCT
[ENA]
¡û
>W1511555611
JZWY01000001
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
127
54
-
Arg
CCT
[ENA]
¡û
>W1511687928
LFVW01000539
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
5446
5521
+
Arg
CCT
[ENA]
¡û
>W1511696798
LGDO01000142
Actinomycetota
Streptomyces sp. XY431 [LGDO]
6527
6600
+
Arg
CCT
[ENA]
¡û
>W1610650816
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
3280749
3280674
-
Arg
CCT
[ENA]
¡û
>W1710765802
LIPD01000002
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
37204
37279
+
Arg
CCT
[ENA]
¡û
>W1710769513
LISX01000004
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
356105
356030
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK