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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.515684 (46 seq.)
>W1710786944
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
5183282
5183207
-
Arg
TCT
[ENA]
¡û
>W1710860270
LMCT01000007
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
86681
86756
+
Arg
TCT
[ENA]
¡û
>W1710866966
LMHX01000019
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
23220
23145
-
Arg
TCT
[ENA]
¡û
>W1711183446
LWLA01000048
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
340112
340185
+
Arg
TCT
[ENA]
¡û
>WENV180023325
FTHV01000073
[FTHV] metagenome; soil
264
191
-
Arg
TCT
[ENA]
¡û
>WENV180023455
FTHY01000073
[FTHY] metagenome; soil
264
191
-
Arg
TCT
[ENA]
¡û
>WENV180024758
FTIJ01005453
[FTIJ] metagenome; soil
1926
1999
+
Arg
TCT
[ENA]
¡û
>WENV180033285
FTKF01283992
[FTKF] metagenome; soil
2960
3035
+
Arg
TCT
[ENA]
¡û
>WENV180033607
FTKL01000408
[FTKL] metagenome; soil
136
63
-
Arg
TCT
[ENA]
¡û
>W141282801
JAIZ01000716
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
3404
3479
+
Arg
TCT
[ENA]
¡û
>WENV170565579
FJVZ01000495
[FJVZ] metagenome; soil
13210
13283
+
Arg
TCT
[ENA]
¡û
>WENV170565616
FJVZ01001184
[FJVZ] metagenome; soil
534
607
+
Arg
TCT
[ENA]
¡û
>C181116309
CP025394
Actinomycetota
Kitasatospora sp. MMS16-BH015 [CP025394]
6245532
6245457
-
Arg
TCT
-
¡û
>W141726657
JNBY01000103
Actinomycetota
Kitasatospora cheerisanensis KCTC 2395 [JNBY]
24969
24896
-
Arg
TCT
[ENA]
¡û
>W141756104
JNWY01000071
Actinomycetota
Kitasatospora setae [JNWY]
12589
12514
-
Arg
TCT
[ENA]
¡û
>W141757018
JNXO01002770
Actinomycetota
Kitasatospora misakiensis [JNXO]
2957
3032
+
Arg
TCT
[ENA]
¡û
>W141771124
JOGY01000659
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
6183
6258
+
Arg
TCT
[ENA]
¡û
>W141771904
JOHM01001232
Actinomycetota
Streptomyces sp. NRRL F-6133 [JOHM]
578
505
-
Arg
TCT
[ENA]
¡û
>W1911083757
NNBO01000028
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
9645
9718
+
Arg
TCT
[ENA]
¡û
>W1810121503
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
2558797
2558871
+
Arg
TCT
[ENA]
¡û
>W1810907969
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
7178798
7178723
-
Arg
TCT
[ENA]
¡û
>W2010705617
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
2252505
2252580
+
Arg
TCT
[ENA]
¡û
>W2011007150
NNBO01000028
Actinomycetota
Kitasatospora sp. CB02891 [NNBO]
9645
9718
+
Arg
TCT
[ENA]
¡û
>W2011491040
RSFG01000002
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
441516
441590
+
Arg
TCT
[ENA]
¡û
>W2012047357
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
5549479
5549404
-
Arg
TCT
[ENA]
¡û
>W2012473276
WWHA01000001
Actinomycetota
Kitasatospora sp. SID7827 [WWHA]
6104419
6104345
-
Arg
TCT
[ENA]
¡û
>W2110038182
BMRI01000038
Actinomycetota
Kitasatospora griseola JCM 3339 [BMRI]
48578
48651
+
Arg
TCT
[ENA]
¡û
>W2110039445
BMSD01000025
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
26559
26486
-
Arg
TCT
[ENA]
¡û
>W2110053275
BNBO01000022
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
26418
26345
-
Arg
TCT
[ENA]
¡û
>W2110556217
JAGIYX010000005
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
27817
27743
-
Arg
TCT
[ENA]
¡û
>W2110641943
JAHSQD010000222
Actinomycetota
Streptomyces sp. LS1784 [JAHSQD]
11523
11448
-
Arg
TCT
[ENA]
¡û
>W2110645366
JAHTKP010000007
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
223062
223137
+
Arg
TCT
[ENA]
¡û
>W2110751250
MSJQ01000247
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
1176
1251
+
Arg
TCT
[ENA]
¡û
>C241209743
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
6248785
6248712
-
Arg
TCT
-
¡û
>C241210174
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
3423481
3423554
+
Arg
TCT
-
¡û
>C241210276
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
5963335
5963261
-
Arg
TCT
-
¡û
>C241321845
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
6256418
6256345
-
Arg
TCT
-
¡û
>C11111763
AP010968
Actinomycetota
Kitasatospora setae KM-6054 [AP010968]
6104419
6104344
-
Arg
TCT
[Ensembl]
¡û
>W1511519264
JXZB01000002
Actinomycetota
Kitasatospora griseola MF730-N6 [JXZB]
254367
254294
-
Arg
TCT
[ENA]
¡û
>W1511529084
JYJF01000071
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
11306
11381
+
Arg
TCT
[ENA]
¡û
>W1511687941
LFVW01001161
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
1121
1196
+
Arg
TCT
[ENA]
¡û
>W1610650799
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
5183282
5183207
-
Arg
TCT
[ENA]
¡û
>W1610722616
LMCT01000007
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
86681
86756
+
Arg
TCT
[ENA]
¡û
>W1610729312
LMHX01000019
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
23220
23145
-
Arg
TCT
[ENA]
¡û
>W1710765861
LIPD01000017
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
17314
17239
-
Arg
TCT
[ENA]
¡û
>W1710769536
LISX01000009
Actinomycetota
Kitasatospora sp. CB01950 [LISX]
304003
304076
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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