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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.516132 (88 seq.)
>W1711120926
LUHJ01000039
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
18071
18143
+
Met
CAT
[ENA]
¡û
>W1711335795
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
833868
833796
-
Met
CAT
[ENA]
¡û
>W1711711332
MTAV01000053
Cyanobacteriota
Nostoc sp. T09 [MTAV]
16985
17057
+
Met
CAT
[ENA]
¡û
>W1711711366
MTAW01000106
Cyanobacteriota
Nostoc sp. 106C [MTAW]
10480
10552
+
Met
CAT
[ENA]
¡û
>W1711711436
MTAX01000072
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
241093
241165
+
Met
CAT
[ENA]
¡û
>C001231
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
2938983
2938911
-
Met
CAT
[Ensembl]
¡û
>C015292
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
6070047
6070119
+
Met
CAT
[Ensembl]
¡û
>WENV180037680
FVAA011472074
[FVAA] soil metagenome; Soil
262
190
-
Ile2
CAT
[ENA]
¡û
>WENV180041944
LLBZ010771421
[LLBZ] soil metagenome; soil from tomato rhizosphere
557
485
-
Ile2
CAT
[ENA]
¡û
>W08009365
ABOY01000008
Cyanobacteriota
Gloeothece citriformis PCC 7424 [ABOY]
52081
52009
-
Met
CAT
[ENA]
¡û
>W08011366
ABVE01000009
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
220182
220256
+
Met
CAT
[ENA]
¡û
>C181004763
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
8092547
8092619
+
Met
CAT
-
¡û
>C181078433
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
4662545
4662473
-
Met
CAT
-
¡û
>C191001276
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
6343506
6343434
-
Met
CAT
-
¡û
>W09101162
AAEA01000016
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
5456
5528
+
Met
CAT
[ENA]
¡û
>W1910008421
BDGE01000093
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
76838
76910
+
Met
CAT
[ENA]
¡û
>C09103531
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
776262
776334
+
Met
CAT
[Ensembl]
¡û
>W2010077722
BDGE01000093
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
76838
76910
+
Ile2
CAT
[ENA]
¡û
>W2010745135
JACKZL010000195
Cyanobacteriota
Trichormus variabilis V5 [JACKZL]
8917
8845
-
Ile2
CAT
[ENA]
¡û
>W2010745187
JACKZM010000200
Cyanobacteriota
Trichormus variabilis PNB [JACKZM]
939
1011
+
Ile2
CAT
[ENA]
¡û
>W2010745303
JACKZO010000189
Cyanobacteriota
Trichormus variabilis ARAD [JACKZO]
961
1033
+
Ile2
CAT
[ENA]
¡û
>W2010745345
JACKZP010000164
Cyanobacteriota
Trichormus variabilis N2B [JACKZP]
8950
8878
-
Ile2
CAT
[ENA]
¡û
>W2010745381
JACKZQ010000217
Cyanobacteriota
Trichormus variabilis FSR [JACKZQ]
8908
8836
-
Ile2
CAT
[ENA]
¡û
>W2010745573
JACKZT010000163
Cyanobacteriota
Trichormus variabilis 9RC [JACKZT]
8927
8855
-
Ile2
CAT
[ENA]
¡û
>W2011488861
RSCN01000014
Cyanobacteriota
Nostoc sp. PCC 7120 [RSCN]
122440
122512
+
Ile2
CAT
[ENA]
¡û
>W2110226149
JACJNU010000048
Cyanobacteriota
Microcoleus sp. FACHB-SPT15 [JACJNU]
4055
3983
-
Ile2
CAT
[ENA]
¡û
>W2110228110
JACJPD010000048
Cyanobacteriota
Microcoleus sp. FACHB-53 [JACJPD]
187401
187329
-
Ile2
CAT
[ENA]
¡û
>W2110228836
JACJPR010000070
Cyanobacteriota
Microcoleus sp. FACHB-1 [JACJPR]
104454
104526
+
Ile2
CAT
[ENA]
¡û
>W2110229051
JACJPX010000016
Cyanobacteriota
Calothrix membranacea FACHB-236 [JACJPX]
38757
38829
+
Ile2
CAT
[ENA]
¡û
>W2110229246
JACJQC010000012
Cyanobacteriota
Anabaena cylindrica FACHB-318 [JACJQC]
118991
119063
+
Ile2
CAT
[ENA]
¡û
>W2110229360
JACJQF010000001
Cyanobacteriota
Calothrix sp. FACHB-168 [JACJQF]
426002
425930
-
Ile2
CAT
[ENA]
¡û
>W2110229461
JACJQG010000046
Cyanobacteriota
Calothrix anomala FACHB-343 [JACJQG]
45260
45188
-
Ile2
CAT
[ENA]
¡û
>W2110229499
JACJQH010000030
Cyanobacteriota
Calothrix parietina FACHB-288 [JACJQH]
31186
31258
+
Ile2
CAT
[ENA]
¡û
>W2110229563
JACJQI010000018
Cyanobacteriota
Aulosira sp. FACHB-113 [JACJQI]
108955
108883
-
Ile2
CAT
[ENA]
¡û
>W2110229605
JACJQJ010000006
Cyanobacteriota
Nostoc linckia FACHB-104 [JACJQJ]
137581
137509
-
Ile2
CAT
[ENA]
¡û
>W2110229673
JACJQK010000001
Cyanobacteriota
Calothrix sp. FACHB-1219 [JACJQK]
363454
363382
-
Ile2
CAT
[ENA]
¡û
>W2110229789
JACJQL010000058
Cyanobacteriota
Nostoc parmelioides FACHB-3921 [JACJQL]
13406
13334
-
Ile2
CAT
[ENA]
¡û
>W2110229949
JACJQP010000012
Cyanobacteriota
Anabaena sp. FACHB-709 [JACJQP]
86760
86688
-
Ile2
CAT
[ENA]
¡û
>W2110230004
JACJQQ010000014
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [JACJQQ]
53353
53281
-
Ile2
CAT
[ENA]
¡û
>W2110230058
JACJQR010000011
Cyanobacteriota
Anabaena cylindrica FACHB-170 [JACJQR]
86780
86708
-
Ile2
CAT
[ENA]
¡û
>W2110230273
JACJQW010000005
Cyanobacteriota
Nostoc sp. FACHB-190 [JACJQW]
107620
107692
+
Ile2
CAT
[ENA]
¡û
>W2110230612
JACJRD010000004
Cyanobacteriota
Calothrix sp. FACHB-156 [JACJRD]
84910
84982
+
Ile2
CAT
[ENA]
¡û
>W2110230667
JACJRE010000004
Cyanobacteriota
Tolypothrix sp. FACHB-123 [JACJRE]
208250
208322
+
Ile2
CAT
[ENA]
¡û
>W2110230740
JACJRF010000008
Cyanobacteriota
Anabaena subtropica FACHB-260 [JACJRF]
157642
157714
+
Ile2
CAT
[ENA]
¡û
>W2110230782
JACJRG010000004
Cyanobacteriota
Anabaena minutissima FACHB-250 [JACJRG]
129241
129313
+
Ile2
CAT
[ENA]
¡û
>W2110230859
JACJRH010000027
Cyanobacteriota
Anabaena variabilis FACHB-171 [JACJRH]
918
990
+
Ile2
CAT
[ENA]
¡û
>W2110230907
JACJRI010000017
Cyanobacteriota
Trichormus variabilis FACHB-319 [JACJRI]
11965
12037
+
Ile2
CAT
[ENA]
¡û
>W2110231489
JACJRU010000009
Cyanobacteriota
Nostoc sp. FACHB-110 [JACJRU]
173990
173918
-
Ile2
CAT
[ENA]
¡û
>W2110231542
JACJRV010000010
Cyanobacteriota
Nostoc sp. FACHB-152 [JACJRV]
69045
69117
+
Ile2
CAT
[ENA]
¡û
>W2110231609
JACJRW010000004
Cyanobacteriota
Nostoc sp. FACHB-145 [JACJRW]
100964
101036
+
Ile2
CAT
[ENA]
¡û
>W2110231671
JACJRX010000008
Cyanobacteriota
Nostoc sp. FACHB-87 [JACJRX]
21916
21988
+
Ile2
CAT
[ENA]
¡û
>W2110231965
JACJSE010000003
Cyanobacteriota
Aulosira sp. FACHB-615 [JACJSE]
167444
167516
+
Ile2
CAT
[ENA]
¡û
>W2110232045
JACJSG010000024
Cyanobacteriota
Anabaena azotica FACHB-119 [JACJSG]
38681
38753
+
Ile2
CAT
[ENA]
¡û
>W2110232994
JACJTB010000039
Cyanobacteriota
Nostoc spongiaeforme FACHB-130 [JACJTB]
10910
10982
+
Ile2
CAT
[ENA]
¡û
>W2110311140
JADEWI010000025
Cyanobacteriota
Nostoc sp. LEGE 06077 [JADEWI]
6707
6635
-
Ile2
CAT
[ENA]
¡û
>W2110311807
JADEWW010000206
Cyanobacteriota
Coleofasciculus sp. LEGE 07081 [JADEWW]
10561
10633
+
Ile2
CAT
[ENA]
¡û
>W2110311900
JADEWY010000029
Cyanobacteriota
Coleofasciculus sp. LEGE 07092 [JADEWY]
10561
10633
+
Ile2
CAT
[ENA]
¡û
>W2110312487
JADEXK010000058
Cyanobacteriota
Nostocales cyanobacterium LEGE 11386 [JADEXK]
37601
37673
+
Ile2
CAT
[ENA]
¡û
>W2110312503
JADEXL010000016
Cyanobacteriota
Tolypothrix sp. LEGE 11397 [JADEXL]
36392
36320
-
Ile2
CAT
[ENA]
¡û
>W2110313143
JADEXZ010000047
Cyanobacteriota
Fortiea sp. LEGE XX443 [JADEXZ]
47057
47129
+
Ile2
CAT
[ENA]
¡û
>W2110405649
JAECZA010000004
Cyanobacteriota
Dendronalium phyllosphericum CENA369 [JAECZA]
72738
72811
+
Ile2
CAT
[ENA]
¡û
>W2110405745
JAECZB010000106
Cyanobacteriota
Atlanticothrix silvestris CENA357 [JAECZB]
10021
10093
+
Ile2
CAT
[ENA]
¡û
>W2110444526
JAERMH010000144
Cyanobacteriota
Trichormus variabilis A2 [JAERMH]
982
1054
+
Ile2
CAT
[ENA]
¡û
>C201085236
CP040297
Cyanobacteriota
Nostoc sp. TCL26-01 [CP040297]
1292756
1292684
-
Ile2
CAT
-
¡û
>C211013073
AP023441
Cyanobacteriota
Nostoc sp. MS1 [AP023441]
3034192
3034264
+
Ile2
CAT
-
¡û
>C211402936
CP083582
Cyanobacteriota
Kovacikia sp. CCNU0001 [CP083582]
5042915
5042843
-
Ile2
CAT
-
¡û
>C231097692
CP063785
Cyanobacteriota
Tolypothrix sp. PCC 7712 [CP063785]
1790454
1790382
-
Ile2
CAT
-
¡û
>C231103006
CP064879
Cyanobacteriota
Tolypothrix sp. PCC 7601 [CP064879]
2800079
2800151
+
Ile2
CAT
-
¡û
>C231129822
CP073041
Cyanobacteriota
Woronichinia naegeliana WA131 [CP073041]
7030565
7030637
+
Ile2
CAT
-
¡û
>C231308941
CP091913
Cyanobacteriota
Nostoc sp. UHCC 0870 [CP091913]
5340440
5340512
+
Ile2
CAT
-
¡û
>C241041061
CP034058
Cyanobacteriota
Anabaena sp. YBS01 [CP034058]
6828874
6828802
-
Ile2
CAT
-
¡û
>C241117976
CP047242
Cyanobacteriota
Trichormus variabilis 0441 [CP047242]
4214578
4214506
-
Ile2
CAT
-
¡û
>C241145297
CP050440
Cyanobacteriota
Tolypothrix sp. PCC 7910 [CP050440]
5522294
5522222
-
Ile2
CAT
-
¡û
>W2130015137
JACJRY010000003
Cyanobacteriota
Anabaena sp. FACHB-83 [JACJRY]
253655
253583
-
Ile2
CAT
[ENA]
¡û
>C241253166
CP124543
Cyanobacteriota
Halotia branconii CENA392 [CP124543]
2696966
2697038
+
Ile2
CAT
-
¡û
>C11106747
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1114393
1114319
-
Met
CAT
[Ensembl]
¡û
>C11106791
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1114393
1114319
-
Met
CAT
[Ensembl]
¡û
>C161002495
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
2245773
2245845
+
Met
CAT
[Ensembl]
¡û
>W1610003527
AGCR01000019
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
33734
33806
+
Met
CAT
[ENA]
¡û
>W1610084853
CDHJ01000046
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
43837
43909
+
Met
CAT
[ENA]
¡û
>C131004200
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
1207664
1207592
-
Met
CAT
[Ensembl]
¡û
>C131004273
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
5381307
5381379
+
Met
CAT
[Ensembl]
¡û
>W1610656815
LJOR01000073
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
102288
102360
+
Met
CAT
[ENA]
¡û
>W1610932107
LUHI01000007
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
9018
8946
-
Met
CAT
[ENA]
¡û
>W1610932163
LUHJ01000039
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
18071
18143
+
Met
CAT
[ENA]
¡û
>W1611066502
MBRD01000033
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
833868
833796
-
Met
CAT
[ENA]
¡û
>W1710004147
AGCR01000019
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
33734
33806
+
Met
CAT
[ENA]
¡û
>W1710089715
CDHJ01000046
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
43837
43909
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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