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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.516353 (113 seq.)
>W1711326601
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231557
231632
+
Gly
GCC
[ENA]
¡û
>W1711326639
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
52621
52546
-
Gly
GCC
[ENA]
¡û
>W1711504158
MKUH01000013
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
54852
54777
-
Gly
GCC
[ENA]
¡û
>W1711504160
MKUH01000013
Betaproteobacteria
Candidatus Accumulibacter sp. 66-26 [MKUH]
54620
54545
-
Gly
GCC
[ENA]
¡û
>C171089768
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
3266775
3266850
+
Gly
GCC
-
¡û
>W131223730
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
100558
100633
+
Gly
GCC
[ENA]
¡û
>W131223732
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
102075
102150
+
Gly
GCC
[ENA]
¡û
>W131223733
AUCH01000001
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
102182
102257
+
Gly
GCC
[ENA]
¡û
>C007476
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1137715
1137790
+
Gly
GCC
[Ensembl]
¡û
>C007477
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1142712
1142787
+
Gly
GCC
[Ensembl]
¡û
>C007486
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
2190666
2190741
+
Gly
GCC
[Ensembl]
¡û
>C007488
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
2190886
2190961
+
Gly
GCC
[Ensembl]
¡û
>WENV180099585
NMRC01019883
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
356
431
+
Gly
GCC
[ENA]
¡û
>WENV180343100
OBLJ01289985
[OBLJ] soil metagenome; Clay
78
3
-
Gly
GCC
[ENA]
¡û
>WENV181297769
OFHK01128694
[OFHK] soil metagenome; Clay
340
265
-
Gly
GCC
[ENA]
¡û
>WENV183667699
ORJL010674311
[ORJL] groundwater metagenome; groundwater
2451
2526
+
Gly
GCC
[ENA]
¡û
>WENV183676813
ORJL011671685
[ORJL] groundwater metagenome; groundwater
1611
1536
-
Gly
GCC
[ENA]
¡û
>WENV183677948
ORJL011816282
[ORJL] groundwater metagenome; groundwater
565
640
+
Gly
GCC
[ENA]
¡û
>WENV183682532
ORMF010454883
[ORMF] groundwater metagenome; groundwater
1230
1305
+
Gly
GCC
[ENA]
¡û
>WENV183683860
ORMF010630436
[ORMF] groundwater metagenome; groundwater
4692
4767
+
Gly
GCC
[ENA]
¡û
>WENV183690326
ORMF011578848
[ORMF] groundwater metagenome; groundwater
435
510
+
Gly
GCC
[ENA]
¡û
>WENV170010739
APMI01027024
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7974
8049
+
Gly
GCC
[ENA]
¡û
>WENV170010917
APMI01035089
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1656
1731
+
Gly
GCC
[ENA]
¡û
>WENV170010919
APMI01035089
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1857
1932
+
Gly
GCC
[ENA]
¡û
>WENV170012279
APMI01145673
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
35
110
+
Gly
GCC
[ENA]
¡û
>WENV170551538
CXWJ01011550
[CXWJ] wastewater metagenome; activated sludge
1344
1269
-
Gly
GCC
[ENA]
¡û
>WENV170553495
CXWK01020865
[CXWK] wastewater metagenome; activated sludge
1529
1454
-
Gly
GCC
[ENA]
¡û
>WENV170571866
FLOH01000348
[FLOH] marine metagenome; water
24731
24806
+
Gly
GCC
[ENA]
¡û
>WENV170650106
JRYD01011408
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1727
1802
+
Gly
GCC
[ENA]
¡û
>WENV170650436
JRYE01000344
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
523
448
-
Gly
GCC
[ENA]
¡û
>WENV170650467
JRYE01001143
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
79
154
+
Gly
GCC
[ENA]
¡û
>WENV170651852
JRYG01006671
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15751
15826
+
Gly
GCC
[ENA]
¡û
>WENV170651854
JRYG01006671
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
15971
16046
+
Gly
GCC
[ENA]
¡û
>WENV170652542
JRYH01005587
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1308
1383
+
Gly
GCC
[ENA]
¡û
>WENV170652610
JRYH01008942
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
3698
3623
-
Gly
GCC
[ENA]
¡û
>WENV170653025
JRYI01000895
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
2367
2442
+
Gly
GCC
[ENA]
¡û
>WENV170653159
JRYI01008633
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1520
1595
+
Gly
GCC
[ENA]
¡û
>WENV170653429
JRYJ01000710
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
25310
25385
+
Gly
GCC
[ENA]
¡û
>WENV170653431
JRYJ01000710
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
25530
25605
+
Gly
GCC
[ENA]
¡û
>W09100861
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
597551
597626
+
Gly
GCC
[ENA]
¡û
>W09100863
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
597771
597846
+
Gly
GCC
[ENA]
¡û
>W09100893
AADF01000006
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
69394
69319
-
Gly
GCC
[ENA]
¡û
>W09100894
AADF01000006
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
64397
64322
-
Gly
GCC
[ENA]
¡û
>W1930020297
MWUM01000028
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
68456
68381
-
Gly
GCC
[ENA]
¡û
>W1910183553
BJNV01000013
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52321
52246
-
Gly
GCC
[ENA]
¡û
>W1910183555
BJNV01000013
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52116
52041
-
Gly
GCC
[ENA]
¡û
>W1910183563
BJNV01000035
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
906
831
-
Gly
GCC
[ENA]
¡û
>W1910183578
BJNV01000051
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
25945
26020
+
Gly
GCC
[ENA]
¡û
>W1910828066
MWUM01000006
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
197181
197256
+
Gly
GCC
[ENA]
¡û
>W1910828078
MWUM01000014
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
78
3
-
Gly
GCC
[ENA]
¡û
>W1910828084
MWUM01000023
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
25313
25388
+
Gly
GCC
[ENA]
¡û
>W1910828101
MWUM01000165
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
200
275
+
Gly
GCC
[ENA]
¡û
>SRA1003939
SRR002328.50074
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
48
123
+
Gly
GCC
[SRA]
>W2010097168
BJNV01000013
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52321
52246
-
Gly
GCC
[ENA]
¡û
>W2010097170
BJNV01000013
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
52116
52041
-
Gly
GCC
[ENA]
¡û
>W2010097178
BJNV01000035
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
906
831
-
Gly
GCC
[ENA]
¡û
>W2010097193
BJNV01000051
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
25945
26020
+
Gly
GCC
[ENA]
¡û
>W2010570405
JAATWB010000011
Betaproteobacteria
Rhodocyclus tenuis DSM 112 [JAATWB]
12056
11981
-
Gly
GCC
[ENA]
¡û
>W2010570407
JAATWB010000011
Betaproteobacteria
Rhodocyclus tenuis DSM 112 [JAATWB]
11807
11732
-
Gly
GCC
[ENA]
¡û
>W2010727890
JACIGE010000004
Betaproteobacteria
Rhodocyclus tenuis 2761 [JACIGE]
266275
266350
+
Gly
GCC
[ENA]
¡û
>W2010727892
JACIGE010000004
Betaproteobacteria
Rhodocyclus tenuis 2761 [JACIGE]
266504
266579
+
Gly
GCC
[ENA]
¡û
>W2010920315
MWUM01000006
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
197181
197256
+
Gly
GCC
[ENA]
¡û
>W2010920327
MWUM01000014
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
78
3
-
Gly
GCC
[ENA]
¡û
>W2010920333
MWUM01000023
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
25313
25388
+
Gly
GCC
[ENA]
¡û
>W2010920350
MWUM01000165
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
200
275
+
Gly
GCC
[ENA]
¡û
>W2011546571
SDKK01000001
Betaproteobacteria
Zoogloea oleivorans Buc [SDKK]
81796
81871
+
Gly
GCC
[ENA]
¡û
>W2011546573
SDKK01000001
Betaproteobacteria
Zoogloea oleivorans Buc [SDKK]
81999
82074
+
Gly
GCC
[ENA]
¡û
>W2011546590
SDKK01000005
Betaproteobacteria
Zoogloea oleivorans Buc [SDKK]
158400
158325
-
Gly
GCC
[ENA]
¡û
>W2011692195
SSSP01000004
Betaproteobacteria
Rhodocyclus tenuis Pfennig 2761 [SSSP]
266279
266354
+
Gly
GCC
[ENA]
¡û
>W2011692197
SSSP01000004
Betaproteobacteria
Rhodocyclus tenuis Pfennig 2761 [SSSP]
266508
266583
+
Gly
GCC
[ENA]
¡û
>W2011693713
SSXU01000007
Betaproteobacteria
Zoogloea sp. 1C4 [SSXU]
167931
168006
+
Gly
GCC
[ENA]
¡û
>W2011693715
SSXU01000007
Betaproteobacteria
Zoogloea sp. 1C4 [SSXU]
168142
168217
+
Gly
GCC
[ENA]
¡û
>W2011693746
SSXU01000052
Betaproteobacteria
Zoogloea sp. 1C4 [SSXU]
2310
2235
-
Gly
GCC
[ENA]
¡û
>W2011693883
SSXX01000003
Betaproteobacteria
Dechloromonas sp. H13 [SSXX]
236140
236065
-
Gly
GCC
[ENA]
¡û
>W2011693885
SSXX01000003
Betaproteobacteria
Dechloromonas sp. H13 [SSXX]
235923
235848
-
Gly
GCC
[ENA]
¡û
>W2012156944
VUYQ01000003
Betaproteobacteria
Dechloromonas sp. CZR5 [VUYQ]
187973
188048
+
Gly
GCC
[ENA]
¡û
>W2012343735
WIXJ01000002
Betaproteobacteria
Rhodocyclus tenuis DSM 110 [WIXJ]
85065
84990
-
Gly
GCC
[ENA]
¡û
>W2012343737
WIXJ01000002
Betaproteobacteria
Rhodocyclus tenuis DSM 110 [WIXJ]
84815
84740
-
Gly
GCC
[ENA]
¡û
>W2012347829
WJED01000004
Betaproteobacteria
Rhodocyclus tenuis DSM 111 [WJED]
56415
56340
-
Gly
GCC
[ENA]
¡û
>W2012347831
WJED01000004
Betaproteobacteria
Rhodocyclus tenuis DSM 111 [WJED]
56166
56091
-
Gly
GCC
[ENA]
¡û
>W2030025419
MWUM01000028
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
68456
68381
-
Gly
GCC
[ENA]
¡û
>C231139775
CP075185
Betaproteobacteria
Dechloromonas denitrificans 110 [CP075185]
1006162
1006237
+
Gly
GCC
-
¡û
>C231139807
CP075185
Betaproteobacteria
Dechloromonas denitrificans 110 [CP075185]
2434157
2434082
-
Gly
GCC
-
¡û
>C231139809
CP075185
Betaproteobacteria
Dechloromonas denitrificans 110 [CP075185]
2433943
2433868
-
Gly
GCC
-
¡û
>C231139837
CP075186
Betaproteobacteria
Dechloromonas denitrificans G6 [CP075186]
1083271
1083346
+
Gly
GCC
-
¡û
>C231139869
CP075186
Betaproteobacteria
Dechloromonas denitrificans G6 [CP075186]
2461792
2461717
-
Gly
GCC
-
¡û
>C231139871
CP075186
Betaproteobacteria
Dechloromonas denitrificans G6 [CP075186]
2461578
2461503
-
Gly
GCC
-
¡û
>C231140143
CP075191
Betaproteobacteria
Ferribacterium limneticum 128 [CP075191]
1961621
1961696
+
Gly
GCC
-
¡û
>C231140145
CP075191
Betaproteobacteria
Ferribacterium limneticum 128 [CP075191]
1961841
1961916
+
Gly
GCC
-
¡û
>C231140169
CP075191
Betaproteobacteria
Ferribacterium limneticum 128 [CP075191]
2907727
2907652
-
Gly
GCC
-
¡û
>C231140205
CP075192
Betaproteobacteria
Ferribacterium limneticum 132 [CP075192]
1961621
1961696
+
Gly
GCC
-
¡û
>C231140207
CP075192
Betaproteobacteria
Ferribacterium limneticum 132 [CP075192]
1961841
1961916
+
Gly
GCC
-
¡û
>C231140231
CP075192
Betaproteobacteria
Ferribacterium limneticum 132 [CP075192]
2907729
2907654
-
Gly
GCC
-
¡û
>W2110751650
NHRX01000042
Betaproteobacteria
Rhodocyclus purpureus DSM 168 [NHRX]
12705
12630
-
Gly
GCC
[ENA]
¡û
>W2110753934
NRRZ01000001
Betaproteobacteria
Rhodocyclus tenuis IM 230 [NRRZ]
137747
137822
+
Gly
GCC
[ENA]
¡û
>W2110753936
NRRZ01000001
Betaproteobacteria
Rhodocyclus tenuis IM 230 [NRRZ]
137976
138051
+
Gly
GCC
[ENA]
¡û
>C231454354
CP102486
Betaproteobacteria
Dechloromonas sp. A34 [CP102486]
1568384
1568459
+
Gly
GCC
-
¡û
>C231454381
CP102486
Betaproteobacteria
Dechloromonas sp. A34 [CP102486]
4509918
4509843
-
Gly
GCC
-
¡û
>C231454394
CP102486
Betaproteobacteria
Dechloromonas sp. A34 [CP102486]
3073310
3073235
-
Gly
GCC
-
¡û
>C231454396
CP102486
Betaproteobacteria
Dechloromonas sp. A34 [CP102486]
3073096
3073021
-
Gly
GCC
-
¡û
>C241154043
CP053069
Betaproteobacteria
Usitatibacter rugosus 0125_3 [CP053069]
2550262
2550187
-
Gly
GCC
-
¡û
>C241154147
CP053073
Betaproteobacteria
Usitatibacter palustris Swamp67 [CP053073]
2192980
2192905
-
Gly
GCC
-
¡û
>W2110804621
WYCU01000001
Betaproteobacteria
Azonexaceae bacterium s22 [WYCU]
270136
270061
-
Gly
GCC
[ENA]
¡û
>W2110804644
WYCU01000004
Betaproteobacteria
Azonexaceae bacterium s22 [WYCU]
233695
233770
+
Gly
GCC
[ENA]
¡û
>W2110804646
WYCU01000004
Betaproteobacteria
Azonexaceae bacterium s22 [WYCU]
233911
233986
+
Gly
GCC
[ENA]
¡û
>W2110804670
WYCV01000001
Betaproteobacteria
Azonexaceae bacterium t15 [WYCV]
270135
270060
-
Gly
GCC
[ENA]
¡û
>W2110804693
WYCV01000004
Betaproteobacteria
Azonexaceae bacterium t15 [WYCV]
233695
233770
+
Gly
GCC
[ENA]
¡û
>W2110804695
WYCV01000004
Betaproteobacteria
Azonexaceae bacterium t15 [WYCV]
233911
233986
+
Gly
GCC
[ENA]
¡û
>W2310026946
BSPX01000009
Betaproteobacteria
Zoogloea oryzae NBRC 102407 [BSPX]
78100
78175
+
Gly
GCC
[ENA]
¡û
>W2310026948
BSPX01000009
Betaproteobacteria
Zoogloea oryzae NBRC 102407 [BSPX]
78311
78386
+
Gly
GCC
[ENA]
¡û
>W2310026962
BSPX01000026
Betaproteobacteria
Zoogloea oryzae NBRC 102407 [BSPX]
49779
49854
+
Gly
GCC
[ENA]
¡û
>W1611063337
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231557
231632
+
Gly
GCC
[ENA]
¡û
>W1611063375
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
52621
52546
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK