This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51771 (24 seq.)
>W1711606576
MORL01000003
Bacteroidota
Arsenicibacter rosenii [MORL]
351522
351435
-
Ser
TGA
[ENA]
¡û
>W131169913
ARFC01000033
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
10202
10115
-
Ser
TGA
[ENA]
¡û
>W131169941
ARFD01000063
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
43639
43726
+
Ser
TGA
[ENA]
¡û
>C181113143
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
3196632
3196547
-
Ser
TGA
-
¡û
>W09109909
ABUR01000004
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
411837
411924
+
Ser
TGA
[ENA]
¡û
>W1911497271
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2005577
2005492
-
Ser
TGA
[ENA]
¡û
>W1810364377
PVTE01000011
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
97465
97550
+
Ser
TGA
[ENA]
¡û
>W1810692109
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
969414
969329
-
Ser
TGA
[ENA]
¡û
>SRA1015446
SRR023846.62571
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
256
169
-
Ser
TGA
[SRA]
>C151068609
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3136721
3136806
+
Ser
TGA
[Ensembl]
¡û
>W2010468889
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
1466149
1466234
+
Ser
TGA
[ENA]
¡û
>W2011158175
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2005577
2005492
-
Ser
TGA
[ENA]
¡û
>W2012412171
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
969414
969329
-
Ser
TGA
[ENA]
¡û
>W2012412213
WPIN01000031
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
37841
37926
+
Ser
TGA
[ENA]
¡û
>W2110283036
JACXAA010000009
Bacteroidota
Spirosoma validum BT704 [JACXAA]
202439
202354
-
Ser
TGA
[ENA]
¡û
>C201250748
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
2902755
2902840
+
Ser
TGA
-
¡û
>C211124468
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
2779576
2779491
-
Ser
TGA
-
¡û
>C211384667
CP081299
Bacteroidota
Dyadobacter sp. NIV53 [CP081299]
5557044
5556959
-
Ser
TGA
-
¡û
>C231407133
CP098805
Bacteroidota
Dyadobacter sp. CY22 [CP098805]
306528
306613
+
Ser
TGA
-
¡û
>C241057095
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
3995644
3995559
-
Ser
TGA
-
¡û
>C241171850
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
3043308
3043223
-
Ser
TGA
-
¡û
>C10111760
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
2757294
2757381
+
Ser
TGA
[Ensembl]
¡û
>C161104974
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
4632729
4632816
+
Ser
TGA
[Ensembl]
¡û
>W1710558180
FOLQ01000001
Bacteroidota
Spirosoma endophyticum [FOLQ]
638360
638447
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK