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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52188 (11 seq.)
>w027442
ABCE01000022
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
109688
109599
-
Ser
CGA
[ENA]
¡û
>WENV170014904
AZIC01004228
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
3553
3638
+
Ser
CGA
[ENA]
¡û
>WENV170120970
CENL01030597
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
22688
22603
-
Ser
CGA
[ENA]
¡û
>WENV170668352
LADL02003167
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
462
377
-
Ser
CGA
[ENA]
¡û
>W2012143764
VTSR01000017
Planctomycetota
Gimesia sp. JC646 [VTSR]
49366
49281
-
Ser
CGA
[ENA]
¡û
>C241044050
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
6670465
6670380
-
Ser
CGA
-
¡û
>C241044499
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
6973574
6973488
-
Ser
CGA
-
¡û
>C241044559
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
6570179
6570264
+
Ser
CGA
-
¡û
>C241069948
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
6774310
6774396
+
Ser
CGA
-
¡û
>C241083569
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
4894687
4894772
+
Ser
CGA
-
¡û
>C241083661
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
923770
923684
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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