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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52190 (11 seq.)
>w027459
ABCE01000046
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
18415
18502
+
Leu
GAG
[ENA]
¡û
>WENV170015056
AZIC01020101
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
12947
13032
+
Leu
GAG
[ENA]
¡û
>WENV170121178
CENL01054689
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
193015
193100
+
Leu
GAG
[ENA]
¡û
>WENV170668255
LADL02002158
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
6548
6463
-
Leu
GAG
[ENA]
¡û
>W2012143755
VTSR01000008
Planctomycetota
Gimesia sp. JC646 [VTSR]
253902
253987
+
Leu
GAG
[ENA]
¡û
>C241044065
CP036277
Planctomycetota
Gimesia panareensis Pan110 [CP036277]
530835
530750
-
Leu
GAG
-
¡û
>C241044526
CP036317
Planctomycetota
Gimesia panareensis Pan153 [CP036317]
493189
493104
-
Leu
GAG
-
¡û
>C241044582
CP036353
Planctomycetota
Gimesia maris CA11 [CP036353]
485619
485534
-
Leu
GAG
-
¡û
>C241069971
CP042910
Planctomycetota
Gimesia maris DSM 8797 [CP042910]
474511
474426
-
Leu
GAG
-
¡û
>C241083560
CP043930
Planctomycetota
Gimesia benthica E7 [CP043930]
3277319
3277404
+
Leu
GAG
-
¡û
>C241083629
CP043931
Planctomycetota
Gimesia maris DSM 8797 [CP043931]
7224906
7224991
+
Leu
GAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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