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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52193 (26 seq.)
>W1710996774
LQBR01000008
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
58025
58112
+
Ser
GGA
[ENA]
¡û
>WENV170173798
CEOQ01244329
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
274
361
+
Ser
GGA
[ENA]
¡û
>WENV170462772
CEVD01086142
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
111
198
+
Ser
GGA
[ENA]
¡û
>WENV170656709
JTFO01036131
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
449
362
-
Ser
GGA
[ENA]
¡û
>WENV170656795
JTFO01044577
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
91
4
-
Ser
GGA
[ENA]
¡û
>W141712337
JMQN01000040
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
126922
126835
-
Ser
GGA
[ENA]
¡û
>W1810248954
PQBW01002853
Gammaproteobacteria
Pseudoalteromonas sp. T1lg65 [PQBW]
218
305
+
Ser
GGA
[ENA]
¡û
>W2010683127
JACEMT010000049
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
185722
185809
+
Ser
GGA
[ENA]
¡û
>W2011633673
SMFU01000011
Gammaproteobacteria
Marinobacterium mangrovicola DSM 27697 [SMFU]
249186
249273
+
Ser
GGA
[ENA]
¡û
>W2011963827
VAWC01000009
Gammaproteobacteria
Neptunomonas concharum JCM 17730 [VAWC]
3714
3801
+
Ser
GGA
[ENA]
¡û
>W2110026462
BMIJ01000002
Gammaproteobacteria
Marinobacterium zhoushanense CGMCC 1.15341 [BMIJ]
111129
111042
-
Ser
GGA
[ENA]
¡û
>W2110445215
JAERQK010000010
Gammaproteobacteria
Motiliproteus sediminis HS6 [JAERQK]
1159
1246
+
Ser
GGA
[ENA]
¡û
>W2110640688
JAHREP010000013
Gammaproteobacteria
Marinobacterium ramblicola D7 [JAHREP]
90418
90331
-
Ser
GGA
[ENA]
¡û
>C231019876
AP025763
Gammaproteobacteria
Neptuniibacter sp. PT1 [AP025763]
2726840
2726753
-
Ser
GGA
-
¡û
>C231254152
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
2362991
2363078
+
Ser
GGA
-
¡û
>C231313115
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
2118101
2118014
-
Ser
GGA
-
¡û
>C231316276
CP092418
Gammaproteobacteria
Microbulbifer variabilis SCSIO 43006 [CP092418]
1638434
1638521
+
Ser
GGA
-
¡û
>C241083072
CP043869
Gammaproteobacteria
Neptunomonas concharum JCM17730 [CP043869]
1139003
1139090
+
Ser
GGA
-
¡û
>C241095631
CP045369
Gammaproteobacteria
Microbulbifer sp. THAF38 [CP045369]
3079568
3079481
-
Ser
GGA
-
¡û
>C241121039
CP047569
Gammaproteobacteria
Microbulbifer sp. ALW1 [CP047569]
2424102
2424189
+
Ser
GGA
-
¡û
>C241293275
CP130317
Gammaproteobacteria
Microbulbifer thermotolerans HB226069 [CP130317]
2325821
2325734
-
Ser
GGA
-
¡û
>W1610851431
LQBR01000008
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
58025
58112
+
Ser
GGA
[ENA]
¡û
>W1610888491
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
1775856
1775769
-
Ser
GGA
[ENA]
¡û
>W1710539740
FNVQ01000003
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
99618
99531
-
Ser
GGA
[ENA]
¡û
>W1710562208
FOOU01000004
Gammaproteobacteria
Neptunomonas qingdaonensis [FOOU]
394047
394134
+
Ser
GGA
[ENA]
¡û
>W1710598709
FTOE01000002
Gammaproteobacteria
Neptunomonas antarctica [FTOE]
604965
604878
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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