This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52256 (40 seq.)
>W1711386205
MEFA01000128
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
16414
16329
-
Leu
GAG
[ENA]
¡û
>WENV180284199
OBID01020600
[OBID] metagenome; sludge
1344
1258
-
Leu
GAG
[ENA]
¡û
>WENV180691298
OCZS010095688
[OCZS] soil metagenome; soil
214
129
-
Leu
GAG
[ENA]
¡û
>W141214347
AZSS01000058
Actinomycetota
Streptomyces exfoliatus DSM 41693 [AZSS]
9020
9107
+
Leu
GAG
[ENA]
¡û
>WENV183718411
PDWJ01003886
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7210
7123
-
Leu
GAG
[ENA]
¡û
>WENV170012000
APMI01109251
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2344
2429
+
Leu
GAG
[ENA]
¡û
>WENV170723319
LSQX01264091
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1
85
+
Leu
GAG
[ENA]
¡û
>WENV170979792
MTKZ01107613
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
636
721
+
Leu
GAG
[ENA]
¡û
>W1910038418
BEGX01000052
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
150532
150617
+
Leu
GAG
[ENA]
¡û
>W1910182003
BJMN01000019
Actinomycetota
Streptomyces gardneri NBRC 12865 [BJMN]
157896
157983
+
Leu
GAG
[ENA]
¡û
>W1910182877
BJNG01000012
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
19280
19195
-
Leu
GAG
[ENA]
¡û
>W1810176409
PJPW02000168
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
44448
44533
+
Leu
GAG
[ENA]
¡û
>W2010079052
BEGX01000052
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
150532
150617
+
Leu
GAG
[ENA]
¡û
>W2010095652
BJMN01000019
Actinomycetota
Streptomyces gardneri NBRC 12865 [BJMN]
157896
157983
+
Leu
GAG
[ENA]
¡û
>W2010096492
BJNG01000012
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
19280
19195
-
Leu
GAG
[ENA]
¡û
>W2010100422
BJVJ01000057
Actinomycetota
Pseudonocardia sulfidoxydans NBRC 16205 [BJVJ]
20034
20119
+
Leu
GAG
[ENA]
¡û
>W2010578656
JAAXKY010000030
Actinomycetota
Pseudonocardia xinjiangensis JCM 11839 [JAAXKY]
10411
10496
+
Leu
GAG
[ENA]
¡û
>W2011472321
RPSA01000001
Actinomycetota
Streptomyces sp. WAC01280 [RPSA]
561027
560940
-
Leu
GAG
[ENA]
¡û
>W2011579611
SHKL01000001
Actinomycetota
Pseudonocardia sediminis DSM 45779 [SHKL]
1335441
1335354
-
Leu
GAG
[ENA]
¡û
>W2011615324
SJXF01000107
Actinomycetota
Pseudonocardia dioxanivorans EUR-1 [SJXF]
62400
62485
+
Leu
GAG
[ENA]
¡û
>W2110052778
BNBG01000023
Actinomycetota
Streptomyces gardneri JCM 4375 [BNBG]
133408
133495
+
Leu
GAG
[ENA]
¡û
>W2110062149
BOON01000018
Actinomycetota
Planosporangium mesophilum NBRC 109066 [BOON]
149295
149382
+
Leu
GAG
[ENA]
¡û
>W2110372079
JADQDD010000009
Actinomycetota
Pseudonocardia sp. KRD291 [JADQDD]
41579
41492
-
Leu
GAG
[ENA]
¡û
>W2110372182
JADQDF010000001
Actinomycetota
Pseudonocardia oceani KRD185 [JADQDF]
4260969
4260883
-
Leu
GAG
[ENA]
¡û
>W2110372306
JADQDI010000332
Actinomycetota
Pseudonocardia oceani KRD176 [JADQDI]
1028
942
-
Leu
GAG
[ENA]
¡û
>W2110372341
JADQDK010000001
Actinomycetota
Pseudonocardia abyssalis KRD168 [JADQDK]
6137455
6137370
-
Leu
GAG
[ENA]
¡û
>W2110596163
JAHDTG010000014
Actinomycetota
Pseudonocardia sp. H11422 [JAHDTG]
46615
46700
+
Leu
GAG
[ENA]
¡û
>W2110596207
JAHDTH010000002
Actinomycetota
Pseudonocardia sp. H11425 [JAHDTH]
61440
61525
+
Leu
GAG
[ENA]
¡û
>W2110680481
JAIHBQ010000001
Actinomycetota
Streptomyces lateritius Z1-26 [JAIHBQ]
7049903
7049990
+
Leu
GAG
[ENA]
¡û
>C211126887
CP059991
Actinomycetota
Streptomyces gardneri ATCC 15439 [CP059991]
8322196
8322283
+
Leu
GAG
-
¡û
>C231575982
CP116236
Actinomycetota
Gordonia polyisoprenivorans 135 [CP116236]
2552299
2552384
+
Leu
GAG
-
¡û
>C241032527
CP029194
Actinomycetota
Streptomyces venezuelae ATCC 15068 [CP029194]
607443
607356
-
Leu
GAG
-
¡û
>C241156743
CP053564
Actinomycetota
Pseudonocardia broussonetiae Gen 01 [CP053564]
171657
171743
+
Leu
GAG
-
¡û
>W2130023539
JADQDG010000459
Actinomycetota
Pseudonocardia oceani KRD184 [JADQDG]
978
892
-
Leu
GAG
[ENA]
¡û
>W2130023543
JADQDJ010000048
Actinomycetota
Pseudonocardia abyssalis KRD169 [JADQDJ]
3916
3831
-
Leu
GAG
[ENA]
¡û
>C241210096
CP108474
Actinomycetota
Streptomyces sp. NBC_01255 [CP108474]
655303
655216
-
Leu
GAG
-
¡û
>C11117082
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
5457464
5457549
+
Leu
GAG
[Ensembl]
¡û
>C161051674
CP013129
Actinomycetota
Streptomyces venezuelae ATCC 15439 [CP013129]
8322222
8322309
+
Leu
GAG
-
¡û
>C161107254
LN881739
Actinomycetota
Streptomyces venezuelae ATCC 15439 [LN881739]
740670
740583
-
Leu
GAG
-
¡û
>W1710773373
LIVX01000007
Actinomycetota
Streptomyces sp. CB02261 [LIVX]
522345
522432
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK